Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0304 and PP_0305 are separated by 132 nucleotides PP_0305 and PP_5442 are separated by 3 nucleotides PP_5442 and PP_0306 are separated by 73 nucleotides
PP_0304: PP_0304 - Carnitine uptake ABC transporter, periplasmic component, at 364,657 to 365,601
_0304
PP_0305: PP_0305 - HTH-type transcriptional regulator CdhR, at 365,734 to 366,693
_0305
PP_5442: PP_5442 - protein of unknown function, at 366,697 to 367,314
_5442
PP_0306: PP_0306 - conserved protein of unknown function, at 367,388 to 368,116
_0306
Position (kb) 365
366
367 Strain fitness (log2 ratio) -1
0
1 at 364.881 kb on - strand, within PP_0304 at 364.881 kb on - strand, within PP_0304 at 365.159 kb on + strand, within PP_0304 at 365.160 kb on - strand, within PP_0304 at 365.160 kb on - strand, within PP_0304 at 365.225 kb on + strand, within PP_0304 at 365.226 kb on - strand, within PP_0304 at 365.231 kb on + strand, within PP_0304 at 365.317 kb on - strand, within PP_0304 at 365.317 kb on - strand, within PP_0304 at 365.447 kb on - strand, within PP_0304 at 365.447 kb on - strand, within PP_0304 at 365.625 kb on + strand at 365.625 kb on + strand at 365.626 kb on - strand at 365.626 kb on - strand at 365.626 kb on - strand at 365.626 kb on - strand at 365.626 kb on - strand at 365.626 kb on - strand at 365.631 kb on + strand at 365.632 kb on - strand at 365.662 kb on + strand at 365.662 kb on + strand at 365.663 kb on - strand at 365.663 kb on - strand at 365.711 kb on + strand at 365.711 kb on + strand at 365.851 kb on + strand, within PP_0305 at 365.851 kb on + strand, within PP_0305 at 365.868 kb on + strand, within PP_0305 at 365.869 kb on - strand, within PP_0305 at 366.151 kb on + strand, within PP_0305 at 366.521 kb on - strand, within PP_0305 at 366.619 kb on + strand at 366.619 kb on + strand at 366.619 kb on + strand at 366.620 kb on - strand at 366.620 kb on - strand at 366.685 kb on - strand at 366.728 kb on - strand at 366.857 kb on + strand, within PP_5442 at 366.857 kb on + strand, within PP_5442 at 366.864 kb on - strand, within PP_5442 at 366.949 kb on - strand, within PP_5442 at 366.954 kb on + strand, within PP_5442 at 366.955 kb on - strand, within PP_5442 at 367.044 kb on - strand, within PP_5442 at 367.044 kb on - strand, within PP_5442 at 367.044 kb on - strand, within PP_5442 at 367.076 kb on + strand, within PP_5442 at 367.076 kb on + strand, within PP_5442 at 367.076 kb on + strand, within PP_5442 at 367.076 kb on + strand, within PP_5442 at 367.077 kb on - strand, within PP_5442 at 367.077 kb on - strand, within PP_5442 at 367.089 kb on + strand, within PP_5442 at 367.089 kb on + strand, within PP_5442 at 367.090 kb on - strand, within PP_5442 at 367.095 kb on + strand, within PP_5442 at 367.095 kb on + strand, within PP_5442 at 367.095 kb on + strand, within PP_5442 at 367.095 kb on + strand, within PP_5442 at 367.095 kb on + strand, within PP_5442 at 367.096 kb on - strand, within PP_5442 at 367.138 kb on - strand, within PP_5442 at 367.193 kb on - strand, within PP_5442 at 367.193 kb on - strand, within PP_5442 at 367.216 kb on + strand, within PP_5442 at 367.216 kb on + strand, within PP_5442 at 367.216 kb on + strand, within PP_5442 at 367.216 kb on + strand, within PP_5442 at 367.216 kb on + strand, within PP_5442 at 367.216 kb on + strand, within PP_5442 at 367.217 kb on - strand, within PP_5442 at 367.217 kb on - strand, within PP_5442 at 367.236 kb on + strand, within PP_5442 at 367.236 kb on + strand, within PP_5442 at 367.236 kb on + strand, within PP_5442 at 367.237 kb on - strand, within PP_5442 at 367.305 kb on + strand at 367.306 kb on - strand at 367.393 kb on + strand at 367.560 kb on + strand, within PP_0306
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 364,881 - PP_0304 0.24 -0.6 364,881 - PP_0304 0.24 +0.2 365,159 + PP_0304 0.53 -1.2 365,160 - PP_0304 0.53 -0.5 365,160 - PP_0304 0.53 +0.2 365,225 + PP_0304 0.60 +0.6 365,226 - PP_0304 0.60 -0.4 365,231 + PP_0304 0.61 +1.1 365,317 - PP_0304 0.70 -0.1 365,317 - PP_0304 0.70 -0.9 365,447 - PP_0304 0.84 -0.3 365,447 - PP_0304 0.84 +0.6 365,625 + -0.1 365,625 + +0.4 365,626 - +1.7 365,626 - +0.1 365,626 - +0.3 365,626 - +1.2 365,626 - +0.3 365,626 - -0.9 365,631 + +0.3 365,632 - +0.1 365,662 + -0.8 365,662 + +0.0 365,663 - +0.2 365,663 - +1.0 365,711 + +0.1 365,711 + -0.3 365,851 + PP_0305 0.12 -0.2 365,851 + PP_0305 0.12 -0.8 365,868 + PP_0305 0.14 +0.0 365,869 - PP_0305 0.14 -0.4 366,151 + PP_0305 0.43 +0.4 366,521 - PP_0305 0.82 +0.4 366,619 + +0.2 366,619 + +0.9 366,619 + -0.4 366,620 - -0.2 366,620 - -0.4 366,685 - +0.1 366,728 - -0.3 366,857 + PP_5442 0.26 -0.9 366,857 + PP_5442 0.26 +0.6 366,864 - PP_5442 0.27 -0.2 366,949 - PP_5442 0.41 +1.0 366,954 + PP_5442 0.42 +0.2 366,955 - PP_5442 0.42 -0.1 367,044 - PP_5442 0.56 +1.4 367,044 - PP_5442 0.56 +0.5 367,044 - PP_5442 0.56 +0.3 367,076 + PP_5442 0.61 +0.6 367,076 + PP_5442 0.61 +0.7 367,076 + PP_5442 0.61 +0.8 367,076 + PP_5442 0.61 +0.8 367,077 - PP_5442 0.61 -0.3 367,077 - PP_5442 0.61 +0.7 367,089 + PP_5442 0.63 -0.8 367,089 + PP_5442 0.63 -0.0 367,090 - PP_5442 0.64 +0.8 367,095 + PP_5442 0.64 -0.2 367,095 + PP_5442 0.64 -1.0 367,095 + PP_5442 0.64 -0.9 367,095 + PP_5442 0.64 +0.1 367,095 + PP_5442 0.64 +0.2 367,096 - PP_5442 0.65 -0.3 367,138 - PP_5442 0.71 -0.2 367,193 - PP_5442 0.80 -0.1 367,193 - PP_5442 0.80 -1.6 367,216 + PP_5442 0.84 +0.6 367,216 + PP_5442 0.84 +0.1 367,216 + PP_5442 0.84 -0.3 367,216 + PP_5442 0.84 -0.2 367,216 + PP_5442 0.84 -1.3 367,216 + PP_5442 0.84 -0.5 367,217 - PP_5442 0.84 -0.3 367,217 - PP_5442 0.84 +0.1 367,236 + PP_5442 0.87 -0.4 367,236 + PP_5442 0.87 -0.9 367,236 + PP_5442 0.87 +0.3 367,237 - PP_5442 0.87 +0.6 367,305 + +0.2 367,306 - +0.4 367,393 + -0.4 367,560 + PP_0306 0.24 +1.0
Or see this region's nucleotide sequence