Strain Fitness in Pseudomonas putida KT2440 around PP_0210

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0208 and PP_0209 overlap by 1 nucleotidesPP_0209 and PP_0210 overlap by 4 nucleotidesPP_0210 and PP_0211 overlap by 1 nucleotidesPP_0211 and PP_0213 are separated by 484 nucleotides PP_0208: PP_0208 - putative Nitrate ABC transporter, permease protein, at 259,889 to 260,671 _0208 PP_0209: PP_0209 - ATP-binding taurine transporter subunit, at 260,671 to 261,522 _0209 PP_0210: PP_0210 - putative Phycobiliprotein, at 261,519 to 262,484 _0210 PP_0211: PP_0211 - conserved protein of unknown function, at 262,484 to 262,765 _0211 PP_0213: PP_0213 - succinate-semialdehyde dehydrogenase (NADP+), at 263,250 to 264,692 _0213 Position (kb) 261 262 263Strain fitness (log2 ratio) -2 -1 0 1 2at 260.520 kb on - strand, within PP_0208at 260.522 kb on + strand, within PP_0208at 260.522 kb on + strand, within PP_0208at 260.522 kb on + strand, within PP_0208at 260.523 kb on - strand, within PP_0208at 260.523 kb on - strand, within PP_0208at 260.523 kb on - strand, within PP_0208at 260.537 kb on + strand, within PP_0208at 260.537 kb on + strand, within PP_0208at 260.537 kb on + strand, within PP_0208at 260.538 kb on - strand, within PP_0208at 260.649 kb on - strandat 260.680 kb on + strandat 260.700 kb on + strandat 260.964 kb on + strand, within PP_0209at 260.965 kb on - strand, within PP_0209at 261.229 kb on - strand, within PP_0209at 261.229 kb on - strand, within PP_0209at 261.411 kb on + strand, within PP_0209at 261.411 kb on + strand, within PP_0209at 261.411 kb on + strand, within PP_0209at 261.412 kb on - strand, within PP_0209at 261.518 kb on + strandat 261.518 kb on + strandat 261.519 kb on - strandat 261.781 kb on + strand, within PP_0210at 261.781 kb on + strand, within PP_0210at 261.782 kb on - strand, within PP_0210at 261.782 kb on - strand, within PP_0210at 261.816 kb on - strand, within PP_0210at 261.816 kb on - strand, within PP_0210at 261.890 kb on - strand, within PP_0210at 261.968 kb on - strand, within PP_0210at 262.180 kb on + strand, within PP_0210at 262.193 kb on - strand, within PP_0210at 262.249 kb on + strand, within PP_0210at 262.249 kb on + strand, within PP_0210at 262.288 kb on - strand, within PP_0210at 262.682 kb on + strand, within PP_0211at 262.683 kb on - strand, within PP_0211at 262.689 kb on + strand, within PP_0211at 262.689 kb on + strand, within PP_0211at 262.689 kb on + strand, within PP_0211at 262.689 kb on + strand, within PP_0211at 262.690 kb on - strand, within PP_0211at 262.727 kb on + strand, within PP_0211at 262.728 kb on - strand, within PP_0211at 262.728 kb on - strand, within PP_0211at 262.739 kb on + strandat 262.739 kb on + strandat 262.740 kb on - strandat 262.838 kb on - strandat 262.902 kb on + strandat 263.052 kb on - strandat 263.147 kb on - strandat 263.147 kb on - strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.290 kb on - strandat 263.290 kb on - strandat 263.290 kb on - strandat 263.291 kb on + strandat 263.291 kb on + strandat 263.292 kb on - strandat 263.292 kb on - strandat 263.292 kb on - strandat 263.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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260,520 - PP_0208 0.81 -0.5
260,522 + PP_0208 0.81 -1.3
260,522 + PP_0208 0.81 -1.0
260,522 + PP_0208 0.81 -1.8
260,523 - PP_0208 0.81 +1.3
260,523 - PP_0208 0.81 -0.5
260,523 - PP_0208 0.81 -0.1
260,537 + PP_0208 0.83 -1.1
260,537 + PP_0208 0.83 +0.4
260,537 + PP_0208 0.83 +1.8
260,538 - PP_0208 0.83 +0.1
260,649 - +0.8
260,680 + +0.3
260,700 + -0.8
260,964 + PP_0209 0.34 -0.0
260,965 - PP_0209 0.35 -2.0
261,229 - PP_0209 0.65 -0.1
261,229 - PP_0209 0.65 +0.2
261,411 + PP_0209 0.87 +0.6
261,411 + PP_0209 0.87 +0.8
261,411 + PP_0209 0.87 +0.4
261,412 - PP_0209 0.87 +0.2
261,518 + +0.1
261,518 + +0.3
261,519 - -0.4
261,781 + PP_0210 0.27 +0.4
261,781 + PP_0210 0.27 -0.7
261,782 - PP_0210 0.27 -0.8
261,782 - PP_0210 0.27 +0.2
261,816 - PP_0210 0.31 -1.0
261,816 - PP_0210 0.31 +0.2
261,890 - PP_0210 0.38 -0.7
261,968 - PP_0210 0.46 -1.5
262,180 + PP_0210 0.68 -1.4
262,193 - PP_0210 0.70 -1.5
262,249 + PP_0210 0.76 -0.2
262,249 + PP_0210 0.76 +0.1
262,288 - PP_0210 0.80 -1.4
262,682 + PP_0211 0.70 -0.9
262,683 - PP_0211 0.71 +0.5
262,689 + PP_0211 0.73 -0.2
262,689 + PP_0211 0.73 -0.2
262,689 + PP_0211 0.73 -0.8
262,689 + PP_0211 0.73 +0.4
262,690 - PP_0211 0.73 -0.5
262,727 + PP_0211 0.86 +0.7
262,728 - PP_0211 0.87 +0.6
262,728 - PP_0211 0.87 -0.2
262,739 + -0.3
262,739 + +0.7
262,740 - -0.2
262,838 - +0.9
262,902 + -0.8
263,052 - -0.5
263,147 - -0.6
263,147 - +0.6
263,289 + +0.3
263,289 + -0.8
263,289 + -1.1
263,289 + -0.7
263,289 + +0.5
263,289 + -0.7
263,289 + -0.9
263,290 - +1.1
263,290 - -0.5
263,290 - -1.3
263,291 + -0.0
263,291 + -0.6
263,292 - +0.2
263,292 - -1.7
263,292 - -0.3
263,297 - +1.2

Or see this region's nucleotide sequence