Strain Fitness in Pseudomonas putida KT2440 around PP_1803

Experiment: R2A with Vogels_fungal_media 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vogels_fungal_media 0.8X
2,025,275	-		PP_1802	0.25	+1.6
2,025,292	+		PP_1802	0.26	+0.3
2,025,292	+		PP_1802	0.26	+0.4
2,025,292	+		PP_1802	0.26	+0.8
2,025,292	+		PP_1802	0.26	+0.8
2,025,292	+		PP_1802	0.26	+0.2
2,025,292	+		PP_1802	0.26	+0.4
2,025,292	+		PP_1802	0.26	+0.2
2,025,292	+				+0.8
2,025,293	-		PP_1802	0.26	+0.3
2,025,293	-		PP_1802	0.26	+0.8
2,025,293	-		PP_1802	0.26	+2.0
2,025,293	-		PP_1802	0.26	+0.7
2,025,293	-		PP_1802	0.26	+0.2
2,025,346	+		PP_1802	0.31	+0.6
2,025,347	-		PP_1802	0.31	+0.6
2,025,347	-		PP_1802	0.31	+0.0
2,025,347	-		PP_1802	0.31	+1.1
2,025,347	-		PP_1802	0.31	+1.4
2,025,347	-		PP_1802	0.31	+1.1
2,025,347	-		PP_1802	0.31	+0.5
2,025,388	+		PP_1802	0.35	+1.6
2,025,389	-		PP_1802	0.35	+0.3
2,025,389	-		PP_1802	0.35	+0.5
2,025,389	-		PP_1802	0.35	+1.1
2,025,389	-		PP_1802	0.35	+1.2
2,025,429	+		PP_1802	0.39	+0.8
2,025,430	-		PP_1802	0.39	+0.5
2,025,430	-		PP_1802	0.39	+0.9
2,025,451	+		PP_1802	0.41	+0.8
2,025,451	+		PP_1802	0.41	+0.7
2,025,452	-		PP_1802	0.41	+0.8
2,025,452	-		PP_1802	0.41	+1.4
2,025,452	-		PP_1802	0.41	+0.9
2,025,452	-		PP_1802	0.41	+1.0
2,025,452	-		PP_1802	0.41	+1.9
2,025,452	-		PP_1802	0.41	-0.1
2,025,452	-		PP_1802	0.41	+1.2
2,025,529	+		PP_1802	0.48	+0.6
2,025,529	+		PP_1802	0.48	+1.1
2,025,529	+		PP_1802	0.48	+0.8
2,025,530	-		PP_1802	0.48	+0.5
2,025,530	-		PP_1802	0.48	+1.1
2,025,545	+		PP_1802	0.49	+0.9
2,025,545	+		PP_1802	0.49	+1.3
2,025,599	+		PP_1802	0.54	+0.5
2,025,613	+		PP_1802	0.55	+0.8
2,025,616	+		PP_1802	0.55	-0.2
2,025,616	+		PP_1802	0.55	+0.0
2,025,616	+		PP_1802	0.55	+1.1
2,025,617	-		PP_1802	0.55	+0.1
2,025,617	-		PP_1802	0.55	+0.9
2,025,617	-		PP_1802	0.55	+0.8
2,025,617	-		PP_1802	0.55	+0.4
2,025,632	-		PP_1802	0.57	+0.6
2,025,639	-		PP_1802	0.57	+2.8
2,025,639	-		PP_1802	0.57	+0.1
2,025,651	+		PP_1802	0.59	+0.2
2,025,796	+		PP_1802	0.72	+0.4
2,025,796	+		PP_1802	0.72	+0.3
2,025,797	-		PP_1802	0.72	+0.7
2,025,806	+		PP_1802	0.73	+1.2
2,025,807	-		PP_1802	0.73	+1.4
2,025,807	-		PP_1802	0.73	+1.3
2,025,807	-		PP_1802	0.73	+1.0
2,025,865	+		PP_1802	0.78	+0.8
2,025,865	+		PP_1802	0.78	+0.3
2,025,865	+		PP_1802	0.78	+1.6
2,025,910	+		PP_1802	0.82	+0.3
2,026,042	+				+0.6
2,026,042	+				+0.1
2,026,043	-				+1.3
2,026,052	+				+0.4
2,026,052	+				+1.0
2,026,052	+				+0.8
2,026,052	+				+0.5
2,026,081	+				+1.1
2,026,094	-				+0.5
2,026,094	-				+1.3
2,026,098	+				-0.5
2,026,099	-				+1.2
2,026,099	-				+0.3
2,026,108	+				-0.3
2,026,109	-				+0.8
2,026,179	+				+0.4
2,026,179	+				+0.7
2,026,179	+				+1.0
2,026,179	+				-0.1
2,026,179	+				+0.1
2,026,180	-				+0.7
2,026,180	-				+1.0
2,026,180	-				-0.2
2,026,259	+				+0.6
2,026,259	+				+1.0
2,026,260	-				+0.7
2,026,260	-				+0.3
2,026,260	-				+0.4
2,026,260	-				+1.2
2,026,260	-				+0.7
2,026,260	-				+0.7
2,026,260	-				+1.0
2,026,266	+				-0.6
2,026,267	-				+0.4
2,026,323	+				+0.7
2,026,323	+				+1.1
2,026,377	+		PP_1803	0.14	+0.5
2,026,448	+		PP_1803	0.21	+0.6
2,026,449	-		PP_1803	0.21	+1.2
2,026,449	-		PP_1803	0.21	+0.2
2,026,472	+				+1.5
2,026,472	+		PP_1803	0.24	+0.5
2,026,472	+		PP_1803	0.24	+1.1
2,026,473	-		PP_1803	0.24	+0.3
2,026,473	-		PP_1803	0.24	+1.0
2,026,473	-		PP_1803	0.24	+1.4
2,026,473	-		PP_1803	0.24	-0.1
2,026,478	+		PP_1803	0.24	+1.1
2,026,478	+		PP_1803	0.24	+0.4
2,026,478	+		PP_1803	0.24	-0.3
2,026,478	+		PP_1803	0.24	+0.6
2,026,478	+		PP_1803	0.24	+0.2
2,026,478	+		PP_1803	0.24	+0.5
2,026,478	+		PP_1803	0.24	+0.8
2,026,478	+				+1.1
2,026,478	+		PP_1803	0.24	+0.9
2,026,478	+		PP_1803	0.24	+1.1
2,026,479	-		PP_1803	0.24	+0.6
2,026,479	-		PP_1803	0.24	+0.4
2,026,479	-		PP_1803	0.24	+1.0
2,026,479	-		PP_1803	0.24	+0.6
2,026,479	-		PP_1803	0.24	+0.8
2,026,479	-		PP_1803	0.24	+1.1
2,026,479	-		PP_1803	0.24	+0.6
2,026,654	-		PP_1803	0.42	+0.6
2,026,676	-		PP_1803	0.45	+1.0
2,026,751	+		PP_1803	0.52	+0.9
2,026,752	-		PP_1803	0.52	+1.0
2,026,769	-		PP_1803	0.54	+0.6
2,026,800	+		PP_1803	0.57	+1.7
2,026,800	+		PP_1803	0.57	+0.2
2,026,800	+		PP_1803	0.57	+0.1
2,026,800	+		PP_1803	0.57	+0.9
2,026,801	-		PP_1803	0.57	+0.5
2,026,801	-		PP_1803	0.57	+0.8
2,026,801	-		PP_1803	0.57	+0.9
2,026,826	+		PP_1803	0.60	+0.8
2,026,826	+		PP_1803	0.60	+0.1
2,026,826	+		PP_1803	0.60	-0.2
2,026,827	-		PP_1803	0.60	-0.3
2,026,827	-		PP_1803	0.60	+0.3
2,026,899	+		PP_1803	0.67	+1.5
2,026,899	+		PP_1803	0.67	+1.2
2,026,979	+		PP_1803	0.76	+0.5
2,026,979	+		PP_1803	0.76	+1.0
2,026,980	-		PP_1803	0.76	+1.1
2,026,980	-		PP_1803	0.76	-0.0
2,026,980	-		PP_1803	0.76	-0.1
2,027,060	+		PP_1803	0.84	+1.3
2,027,061	-		PP_1803	0.84	+1.1
2,027,108	+		PP_1803	0.89	+1.0
2,027,109	-		PP_1803	0.89	-0.2
2,027,109	-		PP_1803	0.89	+1.9
2,027,135	+				+1.4
2,027,135	+				+0.6
2,027,135	+				+0.5
2,027,215	+				+0.4
2,027,216	-				+0.6
2,027,216	-				+0.5
2,027,239	+				+1.3
2,027,239	+				+0.2
2,027,239	+				+1.0
2,027,275	-				+0.9
2,027,315	+		PP_1804	0.10	+1.5
2,027,315	+		PP_1804	0.10	+0.7
2,027,315	+		PP_1804	0.10	+0.6
2,027,325	-		PP_1804	0.11	+1.4
2,027,465	-		PP_1804	0.25	+0.6
2,027,628	+		PP_1804	0.41	+0.6
2,027,628	+		PP_1804	0.41	+0.3
2,027,629	-		PP_1804	0.42	+0.7
2,027,727	+		PP_1804	0.51	+1.4
2,027,728	-		PP_1804	0.51	+1.2
2,027,771	-		PP_1804	0.56	+0.5
2,027,771	-		PP_1804	0.56	+1.2
2,027,771	-		PP_1804	0.56	+0.4
2,027,822	+		PP_1804	0.61	+0.3
2,027,823	-		PP_1804	0.61	+0.4
2,027,823	-		PP_1804	0.61	+0.6
2,027,906	-		PP_1804	0.69	+1.2
2,027,908	+		PP_1804	0.69	+0.5
2,027,909	-		PP_1804	0.69	+1.1
2,027,924	-		PP_1804	0.71	+0.8
2,027,926	+		PP_1804	0.71	+0.4
2,027,926	+		PP_1804	0.71	+0.6
2,027,939	-		PP_1804	0.72	+0.4
2,027,997	+		PP_1804	0.78	+0.7
2,027,998	-		PP_1804	0.78	+1.4
2,028,021	+		PP_1804	0.81	+0.9
2,028,022	-		PP_1804	0.81	-0.4
2,028,022	-		PP_1804	0.81	+0.8
2,028,022	-		PP_1804	0.81	+0.8
2,028,022	-		PP_1804	0.81	+0.6
2,028,027	+		PP_1804	0.81	+0.6
2,028,080	+		PP_1804	0.86	+0.8
2,028,084	-		PP_1804	0.87	+0.7
2,028,084	-		PP_1804	0.87	+1.2
2,028,119	-				+0.5
2,028,162	+				+0.2
2,028,162	+				+0.2
2,028,163	-				+0.4
2,028,176	-				+1.9
2,028,192	+				+0.8
2,028,192	+				+0.1
2,028,193	-				+0.5
2,028,193	-				+0.4
2,028,214	-				+0.4
2,028,214	-				+0.0
2,028,214	-				+0.7
2,028,214	-				+0.2
2,028,214	-				+0.9