Strain Fitness in Pseudomonas putida KT2440 around PP_1581

Experiment: R2A with Vogels_fungal_media 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vogels_fungal_media 0.8X
1,771,830	+		PP_1579	0.86	+0.2
1,771,831	-		PP_1579	0.86	+0.5
1,771,831	-		PP_1579	0.86	+0.4
1,771,867	+		PP_1579	0.87	+1.2
1,771,867	+		PP_1579	0.87	+1.1
1,772,038	-				+0.4
1,772,206	-				+1.0
1,772,217	+				-0.1
1,772,217	+				-1.0
1,772,221	-				+0.5
1,772,250	+				+1.2
1,772,251	-				-1.0
1,772,251	-				+0.1
1,772,251	-				+1.1
1,772,251	-				+0.4
1,772,277	-				+1.3
1,772,307	+				-0.2
1,772,365	+		PP_1580	0.23	+0.7
1,772,366	-		PP_1580	0.23	+0.1
1,772,526	+		PP_1580	0.58	-0.3
1,772,526	+		PP_1580	0.58	+0.7
1,772,526	+		PP_1580	0.58	-0.2
1,772,527	-		PP_1580	0.58	+0.1
1,772,527	-		PP_1580	0.58	+0.9
1,772,527	-		PP_1580	0.58	+0.2
1,772,527	-		PP_1580	0.58	+1.3
1,772,528	+		PP_1580	0.58	+0.8
1,772,529	-		PP_1580	0.59	+1.1
1,772,551	-		PP_1580	0.63	+1.2
1,772,551	-		PP_1580	0.63	+0.5
1,772,580	-		PP_1580	0.70	+0.4
1,772,580	-		PP_1580	0.70	+0.2
1,772,580	-		PP_1580	0.70	+1.5
1,772,580	-		PP_1580	0.70	+0.9
1,772,580	-		PP_1580	0.70	-0.0
1,772,659	+		PP_1580	0.87	+0.8
1,772,659	+		PP_1580	0.87	+0.0
1,772,659	+		PP_1580	0.87	+1.1
1,772,659	+		PP_1580	0.87	+0.8
1,772,660	-		PP_1580	0.87	+0.4
1,772,660	-		PP_1580	0.87	+1.0
1,772,662	+		PP_1580	0.88	+0.6
1,772,662	+		PP_1580	0.88	-0.2
1,772,663	-		PP_1580	0.88	+1.3
1,772,663	-		PP_1580	0.88	+0.5
1,772,663	-		PP_1580	0.88	+0.6
1,772,663	-		PP_1580	0.88	+1.1
1,772,715	+				-0.0
1,772,716	-				+0.1
1,772,716	-				+0.6
1,772,716	-				+0.8
1,772,729	-				+0.6
1,772,836	-				+0.1
1,772,874	+				+0.5
1,772,948	-				+1.2
1,772,953	+				-0.2
1,772,953	+				-0.6
1,772,954	-				-0.2
1,772,954	-				+0.8
1,772,954	-				+0.1
1,772,954	-				-0.1
1,772,968	-				+1.5
1,773,096	+				+1.8
1,773,097	-		PP_1581	0.14	+0.5
1,773,099	+		PP_1581	0.14	+0.2
1,773,099	+		PP_1581	0.14	+0.2
1,773,099	+		PP_1581	0.14	-0.4
1,773,099	+		PP_1581	0.14	+0.7
1,773,100	-		PP_1581	0.14	+0.6
1,773,100	-		PP_1581	0.14	-0.1
1,773,109	+		PP_1581	0.15	-0.2
1,773,109	+		PP_1581	0.15	-0.1
1,773,170	+		PP_1581	0.18	+0.3
1,773,206	-		PP_1581	0.19	+2.2
1,773,219	+		PP_1581	0.20	+1.0
1,773,219	+		PP_1581	0.20	-0.2
1,773,220	-		PP_1581	0.20	+1.8
1,773,287	-		PP_1581	0.24	+0.1
1,773,287	-		PP_1581	0.24	+0.9
1,773,517	+		PP_1581	0.35	+0.2
1,773,529	+		PP_1581	0.36	+1.0
1,773,558	-		PP_1581	0.37	+1.0
1,773,618	+		PP_1581	0.40	+0.3
1,773,675	-		PP_1581	0.43	+0.9
1,773,740	-		PP_1581	0.46	+0.0
1,773,740	-		PP_1581	0.46	+0.2
1,773,781	+		PP_1581	0.48	+1.4
1,773,782	-		PP_1581	0.48	-0.1
1,773,850	+		PP_1581	0.52	+0.6
1,773,883	+		PP_1581	0.53	+1.0
1,773,883	+		PP_1581	0.53	+0.8
1,773,884	-		PP_1581	0.54	-0.6
1,773,884	-		PP_1581	0.54	+0.6
1,773,889	+		PP_1581	0.54	+0.5
1,773,889	+		PP_1581	0.54	+0.2
1,773,890	-		PP_1581	0.54	+0.8
1,773,890	-		PP_1581	0.54	+0.0
1,773,976	-		PP_1581	0.58	+1.3
1,773,976	-		PP_1581	0.58	+0.2
1,773,976	-		PP_1581	0.58	+0.1
1,774,071	+		PP_1581	0.63	+0.2
1,774,072	-		PP_1581	0.63	+0.3
1,774,072	-		PP_1581	0.63	+0.1
1,774,103	+		PP_1581	0.65	-0.1
1,774,104	-				-0.2
1,774,125	-		PP_1581	0.66	+0.9
1,774,128	+		PP_1581	0.66	+0.6
1,774,155	-		PP_1581	0.67	+0.2
1,774,175	-		PP_1581	0.68	+0.8
1,774,175	-		PP_1581	0.68	+1.2
1,774,185	-		PP_1581	0.69	+0.7
1,774,185	-		PP_1581	0.69	+0.3
1,774,185	-		PP_1581	0.69	+0.4
1,774,210	+		PP_1581	0.70	-0.9
1,774,211	-		PP_1581	0.70	+1.0
1,774,211	-		PP_1581	0.70	+0.1
1,774,231	+		PP_1581	0.71	+0.1
1,774,231	+		PP_1581	0.71	+0.9
1,774,231	+		PP_1581	0.71	+0.5
1,774,231	+		PP_1581	0.71	+0.6
1,774,231	+		PP_1581	0.71	-0.2
1,774,232	-		PP_1581	0.71	+0.3
1,774,232	-		PP_1581	0.71	+0.7
1,774,232	-		PP_1581	0.71	+0.2
1,774,232	-		PP_1581	0.71	+1.5
1,774,245	+		PP_1581	0.72	-0.0
1,774,245	+		PP_1581	0.72	-1.2
1,774,246	-		PP_1581	0.72	+0.5
1,774,249	+		PP_1581	0.72	+1.3
1,774,249	+		PP_1581	0.72	+1.1
1,774,249	+		PP_1581	0.72	+0.6
1,774,249	-		PP_1581	0.72	-0.4
1,774,250	-		PP_1581	0.72	-0.1
1,774,250	-		PP_1581	0.72	-0.4
1,774,250	-		PP_1581	0.72	-1.3
1,774,284	+		PP_1581	0.74	+1.3
1,774,690	+				-0.5
1,774,690	+				-0.2
1,774,691	-				+0.8
1,774,691	-				+0.3
1,774,808	-				+0.1
1,774,828	+				+2.0
1,774,837	-				+0.4
1,774,837	-				-0.1
1,774,844	+				+0.1
1,774,844	+				-0.5
1,774,845	-				-0.5
1,774,845	-				+0.7
1,774,872	+				+0.3
1,774,872	+				+0.2
1,774,872	+				+0.3
1,774,873	-				-0.6
1,774,873	-				+0.4
1,774,890	-				-0.6
1,774,923	+				+1.2
1,774,923	+				-0.0
1,774,923	+				+0.5
1,774,923	+				+0.9
1,774,923	+				+0.8
1,774,923	+				+0.4
1,774,923	+				+0.4
1,774,923	+				-0.2
1,774,923	+				+0.5
1,774,923	+				+0.1
1,774,923	+				+0.6
1,774,923	+				-0.0
1,774,924	-				+1.2
1,774,924	-				+0.5
1,774,924	-				-0.0
1,774,924	-				+0.3
1,774,924	-				-0.0
1,774,978	+		PP_1582	0.15	+0.4
1,774,979	-		PP_1582	0.15	+0.4
1,774,997	+		PP_1582	0.16	+1.3
1,774,997	+		PP_1582	0.16	-0.2
1,774,997	+		PP_1582	0.16	+0.2
1,774,997	+		PP_1582	0.16	-0.0
1,774,998	-		PP_1582	0.16	+0.8
1,775,010	+		PP_1582	0.18	+0.6
1,775,034	+		PP_1582	0.20	-0.6
1,775,034	+		PP_1582	0.20	+0.1
1,775,035	-		PP_1582	0.20	-1.7
1,775,131	+		PP_1582	0.29	+1.0
1,775,132	-		PP_1582	0.29	+0.2
1,775,132	-		PP_1582	0.29	+1.3
1,775,132	-		PP_1582	0.29	+0.1
1,775,132	-		PP_1582	0.29	+0.3
1,775,132	-		PP_1582	0.29	+0.1
1,775,169	+		PP_1582	0.32	+0.2
1,775,170	-		PP_1582	0.32	+0.3
1,775,170	-		PP_1582	0.32	+0.2
1,775,170	-		PP_1582	0.32	+0.6
1,775,170	-				-0.4
1,775,289	+		PP_1582	0.43	+0.2
1,775,290	-		PP_1582	0.44	+0.4
1,775,290	-		PP_1582	0.44	+0.4
1,775,301	+		PP_1582	0.45	+0.1
1,775,302	-		PP_1582	0.45	+0.2
1,775,302	-		PP_1582	0.45	+0.5
1,775,302	-		PP_1582	0.45	+1.0
1,775,302	-		PP_1582	0.45	+0.5
1,775,302	-		PP_1582	0.45	+0.9
1,775,302	-		PP_1582	0.45	+0.6
1,775,302	-		PP_1582	0.45	+0.6
1,775,302	-		PP_1582	0.45	+0.4
1,775,318	+		PP_1582	0.46	-0.7
1,775,318	+		PP_1582	0.46	+0.9
1,775,318	+		PP_1582	0.46	+0.6
1,775,318	+		PP_1582	0.46	+0.9
1,775,361	+		PP_1582	0.50	-0.5
1,775,362	-		PP_1582	0.50	+0.1
1,775,437	-		PP_1582	0.57	+1.2
1,775,481	-		PP_1582	0.61	+0.8
1,775,494	-		PP_1582	0.62	+0.5
1,775,496	+		PP_1582	0.63	+0.5
1,775,496	+		PP_1582	0.63	+0.4
1,775,496	+		PP_1582	0.63	+0.7
1,775,530	+		PP_1582	0.66	+0.1
1,775,531	-		PP_1582	0.66	-0.2
1,775,541	+		PP_1582	0.67	+0.4
1,775,542	-		PP_1582	0.67	+0.0
1,775,542	-		PP_1582	0.67	-0.1
1,775,589	+		PP_1582	0.71	+0.4
1,775,677	-		PP_1582	0.79	+0.6
1,775,677	-		PP_1582	0.79	+1.6
1,775,677	-		PP_1582	0.79	+0.2
1,775,686	+		PP_1582	0.80	-0.5
1,775,687	-		PP_1582	0.80	-0.1
1,775,687	-		PP_1582	0.80	-0.1
1,775,694	+		PP_1582	0.81	-0.2
1,775,694	+				+0.2
1,775,695	-		PP_1582	0.81	+0.5
1,775,695	-		PP_1582	0.81	+0.8
1,775,715	+		PP_1582	0.83	-0.1
1,775,715	+		PP_1582	0.83	-1.2
1,775,715	+		PP_1582	0.83	-0.7
1,775,716	-		PP_1582	0.83	+0.2
1,775,809	+				-0.5
1,775,809	+				-0.4
1,775,809	+				-0.4
1,775,809	+				-0.6