Strain Fitness in Pseudomonas putida KT2440 around PP_1572

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1569 and PP_1570 overlap by 1 nucleotidesPP_1570 and PP_1571 overlap by 8 nucleotidesPP_1571 and PP_1572 overlap by 4 nucleotidesPP_1572 and PP_1573 are separated by 65 nucleotidesPP_1573 and PP_1574 are separated by 8 nucleotides PP_1569: PP_1569 - conserved protein of unknown function, at 1,762,367 to 1,762,843 _1569 PP_1570: PP_1570 - Head-tail adaptor, at 1,762,843 to 1,763,184 _1570 PP_1571: PP_1571 - conserved protein of unknown function, at 1,763,177 to 1,763,662 _1571 PP_1572: PP_1572 - conserved protein of unknown function, at 1,763,659 to 1,764,027 _1572 PP_1573: PP_1573 - putative Major tail protein, at 1,764,093 to 1,764,827 _1573 PP_1574: PP_1574 - conserved protein of unknown function, at 1,764,836 to 1,765,306 _1574 Position (kb) 1763 1764 1765Strain fitness (log2 ratio) -1 0 1at 1762.659 kb on - strand, within PP_1569at 1762.683 kb on - strand, within PP_1569at 1762.696 kb on + strand, within PP_1569at 1762.696 kb on + strand, within PP_1569at 1763.057 kb on + strand, within PP_1570at 1763.058 kb on - strand, within PP_1570at 1763.095 kb on + strand, within PP_1570at 1763.095 kb on + strand, within PP_1570at 1763.096 kb on - strand, within PP_1570at 1763.096 kb on - strand, within PP_1570at 1763.153 kb on + strandat 1763.153 kb on + strandat 1763.154 kb on - strandat 1763.154 kb on - strandat 1763.505 kb on + strand, within PP_1571at 1763.546 kb on - strand, within PP_1571at 1763.588 kb on - strand, within PP_1571at 1763.604 kb on - strand, within PP_1571at 1763.741 kb on - strand, within PP_1572at 1763.779 kb on + strand, within PP_1572at 1763.779 kb on + strand, within PP_1572at 1763.780 kb on - strand, within PP_1572at 1763.780 kb on - strand, within PP_1572at 1763.819 kb on - strand, within PP_1572at 1763.819 kb on - strand, within PP_1572at 1763.938 kb on + strand, within PP_1572at 1763.938 kb on + strand, within PP_1572at 1763.938 kb on + strand, within PP_1572at 1763.938 kb on + strand, within PP_1572at 1763.938 kb on + strand, within PP_1572at 1763.939 kb on - strand, within PP_1572at 1763.987 kb on - strand, within PP_1572at 1764.046 kb on + strandat 1764.123 kb on + strandat 1764.123 kb on + strandat 1764.123 kb on + strandat 1764.124 kb on - strandat 1764.153 kb on - strandat 1764.157 kb on + strandat 1764.157 kb on + strandat 1764.157 kb on + strandat 1764.158 kb on - strandat 1764.259 kb on - strand, within PP_1573at 1764.259 kb on - strand, within PP_1573at 1764.410 kb on + strand, within PP_1573at 1764.411 kb on - strand, within PP_1573at 1764.411 kb on - strand, within PP_1573at 1764.411 kb on - strand, within PP_1573at 1764.411 kb on - strand, within PP_1573at 1764.475 kb on - strand, within PP_1573at 1764.591 kb on + strand, within PP_1573at 1764.594 kb on - strand, within PP_1573at 1764.594 kb on - strand, within PP_1573at 1764.594 kb on - strand, within PP_1573at 1764.606 kb on - strand, within PP_1573at 1764.647 kb on + strand, within PP_1573at 1764.647 kb on + strand, within PP_1573at 1764.718 kb on - strand, within PP_1573at 1764.944 kb on + strand, within PP_1574at 1764.944 kb on + strand, within PP_1574at 1764.944 kb on + strand, within PP_1574at 1764.945 kb on - strand, within PP_1574at 1764.945 kb on - strand, within PP_1574at 1764.945 kb on - strand, within PP_1574at 1765.000 kb on + strand, within PP_1574at 1765.000 kb on + strand, within PP_1574

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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1,762,659 - PP_1569 0.61 +0.0
1,762,683 - PP_1569 0.66 +0.4
1,762,696 + PP_1569 0.69 +0.4
1,762,696 + PP_1569 0.69 +0.1
1,763,057 + PP_1570 0.63 +0.3
1,763,058 - PP_1570 0.63 +0.1
1,763,095 + PP_1570 0.74 +0.7
1,763,095 + PP_1570 0.74 +0.6
1,763,096 - PP_1570 0.74 +1.1
1,763,096 - PP_1570 0.74 +1.1
1,763,153 + -0.0
1,763,153 + +0.2
1,763,154 - -0.1
1,763,154 - +1.2
1,763,505 + PP_1571 0.67 -0.0
1,763,546 - PP_1571 0.76 +0.3
1,763,588 - PP_1571 0.85 +1.2
1,763,604 - PP_1571 0.88 +0.1
1,763,741 - PP_1572 0.22 +0.3
1,763,779 + PP_1572 0.33 +0.2
1,763,779 + PP_1572 0.33 +0.3
1,763,780 - PP_1572 0.33 -0.0
1,763,780 - PP_1572 0.33 +1.1
1,763,819 - PP_1572 0.43 +0.7
1,763,819 - PP_1572 0.43 -0.2
1,763,938 + PP_1572 0.76 +1.3
1,763,938 + PP_1572 0.76 +0.3
1,763,938 + PP_1572 0.76 +0.5
1,763,938 + PP_1572 0.76 +1.1
1,763,938 + PP_1572 0.76 +0.5
1,763,939 - PP_1572 0.76 +0.0
1,763,987 - PP_1572 0.89 -0.4
1,764,046 + +0.1
1,764,123 + +0.9
1,764,123 + +1.1
1,764,123 + +0.3
1,764,124 - +0.3
1,764,153 - +1.0
1,764,157 + +0.5
1,764,157 + +0.6
1,764,157 + -0.1
1,764,158 - +0.7
1,764,259 - PP_1573 0.23 +1.0
1,764,259 - PP_1573 0.23 +0.1
1,764,410 + PP_1573 0.43 -0.1
1,764,411 - PP_1573 0.43 +1.5
1,764,411 - PP_1573 0.43 +1.0
1,764,411 - PP_1573 0.43 -0.2
1,764,411 - PP_1573 0.43 -0.5
1,764,475 - PP_1573 0.52 +1.0
1,764,591 + PP_1573 0.68 +0.3
1,764,594 - PP_1573 0.68 -0.3
1,764,594 - PP_1573 0.68 -0.3
1,764,594 - PP_1573 0.68 +0.9
1,764,606 - PP_1573 0.70 +1.3
1,764,647 + PP_1573 0.75 +1.3
1,764,647 + PP_1573 0.75 -0.8
1,764,718 - PP_1573 0.85 +0.3
1,764,944 + PP_1574 0.23 +0.6
1,764,944 + PP_1574 0.23 -0.3
1,764,944 + PP_1574 0.23 +0.7
1,764,945 - PP_1574 0.23 +0.5
1,764,945 - PP_1574 0.23 +0.8
1,764,945 - PP_1574 0.23 +0.0
1,765,000 + PP_1574 0.35 +1.5
1,765,000 + PP_1574 0.35 +0.6

Or see this region's nucleotide sequence