Strain Fitness in Escherichia coli BW25113 around b3136

Experiment: Phage_N4_cage_4_mice _Feces_40 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phage_N4_cage_4_mice _Feces_40 hr
3,279,056	+	agaW	b3134	0.89	-0.1
3,279,056	+	agaW	b3134	0.89	+0.9
3,279,139	+				-0.6
3,279,139	+				+0.1
3,279,143	+				-0.2
3,279,147	-				+0.0
3,279,147	-				+1.4
3,279,147	-				+0.2
3,279,177	-	agaA	b3135	0.15	-0.4
3,279,177	-	agaA	b3135	0.15	-1.1
3,279,239	-	agaA	b3135	0.26	-0.7
3,279,359	-	agaA	b3135	0.48	-0.0
3,279,365	-	agaA	b3135	0.49	+0.8
3,279,367	-	agaA	b3135	0.49	+0.2
3,279,380	-	agaA	b3135	0.52	-0.1
3,279,452	+	agaA	b3135	0.65	+0.4
3,279,455	+	agaA	b3135	0.65	+0.1
3,279,550	-	agaA	b3135	0.82	+0.1
3,279,550	-	agaA	b3135	0.82	-0.1
3,279,714	+				-1.5
3,279,714	+				-0.3
3,279,722	-				-0.0
3,279,722	-				+0.3
3,279,736	+				+1.9
3,279,751	-				-0.1
3,279,751	-				+0.2
3,279,968	+				-0.5
3,280,095	+				+0.2
3,280,095	+				+0.3
3,280,126	-	agaS	b3136	0.11	-0.0
3,280,126	-	agaS	b3136	0.11	+0.3
3,280,136	+	agaS	b3136	0.12	+0.2
3,280,136	+	agaS	b3136	0.12	-0.1
3,280,263	-	agaS	b3136	0.23	-0.5
3,280,263	-	agaS	b3136	0.23	+0.2
3,280,293	-	agaS	b3136	0.26	-1.5
3,280,293	-	agaS	b3136	0.26	-0.5
3,280,529	-	agaS	b3136	0.46	-0.9
3,280,811	+	agaS	b3136	0.70	+0.1
3,280,837	-	agaS	b3136	0.73	+1.3
3,280,917	+	agaS	b3136	0.80	-0.4
3,281,155	-				-0.4
3,281,225	-				+0.5
3,281,244	+				-0.2
3,281,322	-	kbaY	b3137	0.18	+0.0
3,281,367	-	kbaY	b3137	0.23	-1.3
3,281,371	+	kbaY	b3137	0.24	+0.0
3,281,451	-	kbaY	b3137	0.33	+0.2
3,281,583	+	kbaY	b3137	0.49	+0.1
3,281,640	-	kbaY	b3137	0.55	-1.1
3,281,689	+	kbaY	b3137	0.61	-0.1
3,281,689	+	kbaY	b3137	0.61	+0.0
3,281,699	+	kbaY	b3137	0.62	+0.6
3,281,701	+	kbaY	b3137	0.62	-0.6
3,281,708	+	kbaY	b3137	0.63	+0.3
3,281,708	+	kbaY	b3137	0.63	-0.2
3,281,708	+	kbaY	b3137	0.63	-0.0
3,281,710	+	kbaY	b3137	0.63	-0.8
3,281,710	+	kbaY	b3137	0.63	+0.4
3,281,713	+	kbaY	b3137	0.64	+0.5
3,281,713	+	kbaY	b3137	0.64	+0.8
3,281,764	+	kbaY	b3137	0.70	+3.1
3,281,772	+	kbaY	b3137	0.70	+0.0
3,281,772	+	kbaY	b3137	0.70	+0.2
3,281,775	+	kbaY	b3137	0.71	+0.7
3,281,775	+	kbaY	b3137	0.71	-0.8
3,281,780	+	kbaY	b3137	0.71	-0.2
3,281,780	+	kbaY	b3137	0.71	+0.3
3,281,780	+	kbaY	b3137	0.71	+0.0
3,281,780	+	kbaY	b3137	0.71	-0.3
3,281,782	-	kbaY	b3137	0.72	-0.5
3,281,785	+	kbaY	b3137	0.72	-0.5
3,281,785	-	kbaY	b3137	0.72	+0.8
3,281,788	-	kbaY	b3137	0.72	-3.1
3,281,828	+	kbaY	b3137	0.77	-0.2
3,281,854	+	kbaY	b3137	0.80	+0.4
3,281,864	+	kbaY	b3137	0.81	+1.0
3,281,872	-	kbaY	b3137	0.82	+1.9
3,281,891	+	kbaY	b3137	0.84	-0.5
3,281,896	+	kbaY	b3137	0.85	-0.1
3,281,896	+	kbaY	b3137	0.85	+0.6
3,281,896	+	kbaY	b3137	0.85	+0.7
3,281,896	+	kbaY	b3137	0.85	-1.1
3,281,920	+	kbaY	b3137	0.88	+0.6
3,281,922	+	kbaY	b3137	0.88	+0.2
3,281,937	+	kbaY	b3137	0.90	-0.7
3,281,947	+				-0.0
3,281,947	+				+0.0
3,281,965	+				+0.3
3,282,046	+				-0.4
3,282,046	+				+0.8
3,282,068	+				+0.3
3,282,068	+				+2.5
3,282,080	+				+1.9
3,282,080	+				+1.9