Strain Fitness in Pseudomonas putida KT2440 around PP_0035

Experiment: R2A with Vogels_fungal_media 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0033 and PP_0034 overlap by 7 nucleotidesPP_0034 and PP_0035 overlap by 35 nucleotidesPP_0035 and PP_0036 are separated by 257 nucleotides PP_0033: PP_0033 - putative undecaprenyl-glycosyl transferase, at 36,198 to 37,652 _0033 PP_0034: PP_0034 - putative bactoprenol glycosyl-transferase from phage origin, at 37,646 to 38,629 _0034 PP_0035: PP_0035 - putative bactoprenol-linked glycose transferase, at 38,595 to 39,014 _0035 PP_0036: PP_0036 - putative transcriptional regulator, at 39,272 to 40,240 _0036 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 37.596 kb on + strandat 37.657 kb on + strandat 37.725 kb on + strandat 37.725 kb on + strandat 37.725 kb on + strandat 37.726 kb on - strandat 37.726 kb on - strandat 37.866 kb on + strand, within PP_0034at 37.866 kb on + strand, within PP_0034at 37.867 kb on - strand, within PP_0034at 37.867 kb on - strand, within PP_0034at 37.867 kb on - strand, within PP_0034at 38.016 kb on + strand, within PP_0034at 38.033 kb on - strand, within PP_0034at 38.042 kb on + strand, within PP_0034at 38.043 kb on - strand, within PP_0034at 38.184 kb on + strand, within PP_0034at 38.184 kb on + strand, within PP_0034at 38.184 kb on + strand, within PP_0034at 38.184 kb on + strand, within PP_0034at 38.184 kb on + strand, within PP_0034at 38.185 kb on - strand, within PP_0034at 38.185 kb on - strand, within PP_0034at 38.187 kb on + strand, within PP_0034at 38.187 kb on + strand, within PP_0034at 38.188 kb on - strand, within PP_0034at 38.275 kb on - strand, within PP_0034at 38.358 kb on - strand, within PP_0034at 38.414 kb on + strand, within PP_0034at 38.414 kb on + strand, within PP_0034at 38.414 kb on + strand, within PP_0034at 38.415 kb on - strand, within PP_0034at 38.415 kb on - strand, within PP_0034at 38.464 kb on + strand, within PP_0034at 38.465 kb on - strand, within PP_0034at 38.481 kb on + strand, within PP_0034at 38.481 kb on + strand, within PP_0034at 38.585 kb on + strandat 38.618 kb on + strandat 38.618 kb on + strandat 38.619 kb on - strandat 38.619 kb on - strandat 38.619 kb on - strandat 38.619 kb on - strandat 38.679 kb on + strand, within PP_0035at 38.738 kb on + strand, within PP_0035at 38.898 kb on - strand, within PP_0035at 38.922 kb on + strand, within PP_0035at 38.923 kb on - strand, within PP_0035at 39.087 kb on + strandat 39.112 kb on + strandat 39.204 kb on - strandat 39.271 kb on - strandat 39.295 kb on + strandat 39.295 kb on + strandat 39.296 kb on - strandat 39.314 kb on + strandat 39.348 kb on - strandat 39.433 kb on - strand, within PP_0036at 39.492 kb on - strand, within PP_0036at 39.542 kb on + strand, within PP_0036at 39.543 kb on - strand, within PP_0036at 39.543 kb on - strand, within PP_0036at 39.543 kb on - strand, within PP_0036at 39.607 kb on + strand, within PP_0036at 39.608 kb on - strand, within PP_0036at 39.608 kb on - strand, within PP_0036at 39.775 kb on + strand, within PP_0036at 39.776 kb on - strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.800 kb on - strand, within PP_0036at 39.800 kb on - strand, within PP_0036at 39.800 kb on - strand, within PP_0036at 39.803 kb on + strand, within PP_0036at 39.803 kb on + strand, within PP_0036at 39.804 kb on - strand, within PP_0036at 39.804 kb on - strand, within PP_0036at 39.805 kb on + strand, within PP_0036at 39.805 kb on + strand, within PP_0036at 39.806 kb on - strand, within PP_0036at 39.806 kb on - strand, within PP_0036at 39.806 kb on - strand, within PP_0036at 39.806 kb on - strand, within PP_0036at 39.907 kb on - strand, within PP_0036at 40.007 kb on + strand, within PP_0036at 40.007 kb on + strand, within PP_0036at 40.007 kb on + strand, within PP_0036at 40.014 kb on + strand, within PP_0036

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X
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37,596 + -0.3
37,657 + +0.4
37,725 + +0.4
37,725 + +0.7
37,725 + +0.4
37,726 - +0.3
37,726 - +1.3
37,866 + PP_0034 0.22 -0.5
37,866 + PP_0034 0.22 +0.3
37,867 - PP_0034 0.22 +0.3
37,867 - PP_0034 0.22 -0.7
37,867 - PP_0034 0.22 +0.5
38,016 + PP_0034 0.38 +0.3
38,033 - PP_0034 0.39 +0.2
38,042 + PP_0034 0.40 +1.8
38,043 - PP_0034 0.40 -1.0
38,184 + PP_0034 0.55 -0.1
38,184 + PP_0034 0.55 -1.0
38,184 + PP_0034 0.55 +0.3
38,184 + PP_0034 0.55 -0.0
38,184 + PP_0034 0.55 +0.3
38,185 - PP_0034 0.55 -0.7
38,185 - PP_0034 0.55 +0.6
38,187 + PP_0034 0.55 -0.5
38,187 + PP_0034 0.55 +0.5
38,188 - PP_0034 0.55 -0.3
38,275 - PP_0034 0.64 +0.9
38,358 - PP_0034 0.72 +0.4
38,414 + PP_0034 0.78 -0.5
38,414 + PP_0034 0.78 +2.5
38,414 + PP_0034 0.78 -2.5
38,415 - PP_0034 0.78 +0.5
38,415 - PP_0034 0.78 -0.8
38,464 + PP_0034 0.83 -0.2
38,465 - PP_0034 0.83 +0.5
38,481 + PP_0034 0.85 -0.4
38,481 + PP_0034 0.85 -0.5
38,585 + +0.9
38,618 + +0.6
38,618 + +0.4
38,619 - -0.4
38,619 - -0.6
38,619 - -0.6
38,619 - -0.3
38,679 + PP_0035 0.20 +1.1
38,738 + PP_0035 0.34 -1.2
38,898 - PP_0035 0.72 -0.9
38,922 + PP_0035 0.78 +0.6
38,923 - PP_0035 0.78 +1.1
39,087 + -0.4
39,112 + +0.8
39,204 - +0.9
39,271 - -1.4
39,295 + -1.3
39,295 + -0.9
39,296 - +0.5
39,314 + +2.2
39,348 - -0.3
39,433 - PP_0036 0.17 +1.2
39,492 - PP_0036 0.23 +0.8
39,542 + PP_0036 0.28 +0.2
39,543 - PP_0036 0.28 +2.1
39,543 - PP_0036 0.28 +0.2
39,543 - PP_0036 0.28 -1.6
39,607 + PP_0036 0.35 +0.8
39,608 - PP_0036 0.35 +0.3
39,608 - PP_0036 0.35 +0.2
39,775 + PP_0036 0.52 -0.1
39,776 - PP_0036 0.52 -0.8
39,799 + PP_0036 0.54 +0.1
39,799 + PP_0036 0.54 +0.2
39,799 + PP_0036 0.54 +0.7
39,799 + PP_0036 0.54 +0.5
39,799 + PP_0036 0.54 -0.3
39,799 + PP_0036 0.54 +0.2
39,799 + PP_0036 0.54 +0.0
39,799 + PP_0036 0.54 -0.5
39,800 - PP_0036 0.54 -0.4
39,800 - PP_0036 0.54 +0.1
39,800 - PP_0036 0.54 -0.3
39,803 + PP_0036 0.55 +1.0
39,803 + PP_0036 0.55 +1.9
39,804 - PP_0036 0.55 -0.0
39,804 - PP_0036 0.55 -0.2
39,805 + PP_0036 0.55 -0.6
39,805 + PP_0036 0.55 -3.6
39,806 - PP_0036 0.55 -0.3
39,806 - PP_0036 0.55 +1.5
39,806 - PP_0036 0.55 +0.5
39,806 - PP_0036 0.55 +0.6
39,907 - PP_0036 0.66 -0.5
40,007 + PP_0036 0.76 -0.6
40,007 + PP_0036 0.76 +0.1
40,007 + PP_0036 0.76 -1.8
40,014 + PP_0036 0.77 +0.1

Or see this region's nucleotide sequence