Strain Fitness in Pseudomonas putida KT2440 around PP_5198
Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X |
|---|---|---|---|---|---|
| remove | |||||
| 5,930,393 | - | -0.1 | |||
| 5,930,428 | - | -2.0 | |||
| 5,930,436 | - | -0.9 | |||
| 5,930,663 | - | PP_5198 | 0.56 | -3.5 | |
| 5,930,663 | - | PP_5198 | 0.56 | -3.0 | |
| 5,930,663 | - | PP_5198 | 0.56 | -1.1 | |
| 5,930,663 | - | PP_5198 | 0.56 | +0.5 | |
| 5,930,663 | - | PP_5198 | 0.56 | -2.1 | |
| 5,930,684 | - | PP_5198 | 0.61 | -1.1 | |
| 5,930,714 | - | PP_5198 | 0.67 | -0.8 | |
| 5,930,804 | - | PP_5198 | 0.86 | -1.4 | |
| 5,930,804 | - | PP_5198 | 0.86 | +0.1 | |
| 5,930,804 | - | PP_5198 | 0.86 | +0.4 |
Or see this region's nucleotide sequence