Strain Fitness in Pseudomonas putida KT2440 around PP_4997

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
5,692,791	+		PP_4995	0.16	+0.1
5,692,791	+		PP_4995	0.16	-0.2
5,692,791	+		PP_4995	0.16	+0.7
5,692,791	+		PP_4995	0.16	-0.5
5,692,791	+		PP_4995	0.16	+0.1
5,693,038	+		PP_4995	0.59	+0.8
5,693,038	+				+2.0
5,693,038	+		PP_4995	0.59	+0.3
5,693,038	+		PP_4995	0.59	-0.2
5,693,038	+		PP_4995	0.59	+0.5
5,693,038	+		PP_4995	0.59	-0.2
5,693,038	+		PP_4995	0.59	+0.4
5,693,038	+		PP_4995	0.59	+0.0
5,693,038	+		PP_4995	0.59	+0.8
5,693,039	+		PP_4995	0.59	-0.5
5,693,280	+				+0.8
5,693,280	+				-0.7
5,693,689	+				+0.3
5,693,690	-				-0.2
5,693,752	+				+1.2
5,693,835	+		PP_4997	0.17	-3.5
5,693,836	-		PP_4997	0.18	-1.5
5,694,635	-		PP_4998	0.36	-0.2
5,694,939	+				-0.6
5,695,191	+				+1.4
5,695,192	-				-1.6
5,695,192	-				-1.2
5,695,192	-				-2.4