Strain Fitness in Pseudomonas putida KT2440 around PP_4418

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
5,012,638	+				-0.5
5,012,639	-				+1.1
5,012,639	-				+0.0
5,012,639	-				-0.1
5,012,639	-				-0.2
5,012,783	-				+2.0
5,012,783	-				-0.5
5,012,833	+				-0.1
5,012,873	+				-0.0
5,012,969	+				-0.2
5,012,969	+				+0.2
5,012,970	-				-0.2
5,012,970	-				+0.5
5,013,106	+				+0.5
5,013,106	+				-0.5
5,013,106	+				+0.4
5,013,106	+				+0.2
5,013,107	-				+0.7
5,013,107	-				-0.1
5,013,107	-				-1.6
5,013,107	-				-0.6
5,013,167	+				+0.2
5,013,330	+		PP_5678	0.52	+0.4
5,013,330	+		PP_5678	0.52	-0.4
5,013,331	-		PP_5678	0.52	-0.8
5,013,331	-		PP_5678	0.52	-0.6
5,013,380	-		PP_5678	0.69	-0.2
5,013,404	+		PP_5678	0.77	-0.8
5,013,430	+		PP_5678	0.86	-0.3
5,013,431	-		PP_5678	0.86	-1.3
5,013,468	+				-1.6
5,013,468	+				+0.4
5,013,469	-				+2.1
5,013,469	-				+0.2
5,013,469	-				+1.0
5,013,520	+				+2.1
5,013,521	-				-0.1
5,013,527	+				-0.7
5,013,527	+				+0.2
5,013,528	-				+1.0
5,013,528	-				+0.1
5,013,552	+				+0.0
5,013,552	+				+1.2
5,013,553	-				-0.3
5,013,553	-				-0.5
5,013,553	-				+0.3
5,013,723	+		PP_4418	0.49	-0.9
5,013,754	+		PP_4418	0.58	-1.8
5,013,754	+		PP_4418	0.58	+0.2
5,013,755	-		PP_4418	0.59	-0.9
5,013,755	-		PP_4418	0.59	-0.6
5,013,755	-		PP_4418	0.59	-1.4
5,013,873	-				-0.1
5,013,873	-				-1.0
5,013,921	+				+0.3
5,013,922	-				+0.2
5,013,922	-				+1.6
5,013,922	-				+1.1
5,013,922	-				-1.4
5,013,922	-				-0.2
5,013,939	+				-0.3
5,013,940	-				-1.9
5,014,010	+				+1.5
5,014,010	+				+0.1
5,014,010	+				+0.8
5,014,011	-				+0.7
5,014,011	-				-0.6
5,014,011	-				+0.4
5,014,011	-				+0.8
5,014,011	-				+0.6
5,014,011	-				+0.5
5,014,023	+				+0.7
5,014,023	+				-1.8
5,014,023	+				+0.2
5,014,024	-				+0.2
5,014,024	-				+0.2
5,014,099	+				+1.1
5,014,113	+				+0.2
5,014,113	+				+0.9
5,014,114	-				+0.4
5,014,114	-				+0.4
5,014,117	+				+0.0
5,014,117	+				-0.1
5,014,117	+				-0.6
5,014,117	+				+0.3
5,014,117	+				+1.0
5,014,117	+				-0.1
5,014,118	-				-0.1
5,014,118	-				-3.7
5,014,118	-				+0.4
5,014,118	-				-1.0
5,014,118	-				+0.6
5,014,118	-				-0.4
5,014,118	-				+0.2
5,014,118	-				+0.1
5,014,129	-				+0.3
5,014,157	+				+0.7
5,014,208	-				+0.1
5,014,208	-				+0.4
5,014,263	-		PP_4419	0.24	-0.5
5,014,446	+		PP_4419	0.83	-1.6
5,014,446	+		PP_4419	0.83	+0.4
5,014,456	+		PP_4419	0.86	-0.9
5,014,489	+				+1.2
5,014,489	+				+1.1
5,014,490	-				+0.6
5,014,568	-				-1.2
5,014,570	+				-0.3
5,014,571	-				-2.0
5,014,571	-				+0.9
5,014,571	-				+0.1
5,014,571	-				-0.4
5,014,584	+				+1.0
5,014,584	+				+0.3
5,014,584	+				-1.4
5,014,675	-		PP_4420	0.16	+1.2
5,014,777	+		PP_4420	0.29	+0.0
5,014,777	+		PP_4420	0.29	+1.1
5,014,777	+		PP_4420	0.29	-0.4
5,014,778	-		PP_4420	0.29	+0.6
5,014,778	-		PP_4420	0.29	-0.3
5,014,778	-		PP_4420	0.29	+0.3
5,014,778	-		PP_4420	0.29	-2.2
5,014,778	-		PP_4420	0.29	+1.3
5,014,783	+		PP_4420	0.30	+1.3
5,014,784	-		PP_4420	0.30	+0.7
5,014,822	-		PP_4420	0.34	-0.3
5,014,882	+		PP_4420	0.42	+0.5
5,014,882	+		PP_4420	0.42	-0.4
5,014,883	-		PP_4420	0.42	+0.2
5,014,883	-				-0.2