Strain Fitness in Pseudomonas putida KT2440 around PP_4343

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
4,932,147	+				+1.5
4,932,166	-				-0.0
4,932,192	+				+1.5
4,932,192	+				-0.5
4,932,193	-				+0.2
4,932,193	-				+1.3
4,932,193	-				+1.2
4,932,217	+				+0.5
4,932,217	+				+0.7
4,932,217	+				-0.2
4,932,218	-				+1.8
4,932,218	-				-1.4
4,932,218	-				+0.2
4,932,218	-				+1.6
4,932,220	+				+0.8
4,932,220	+				-1.3
4,932,221	-				-0.2
4,932,221	-				+0.0
4,932,366	-		PP_4342	0.18	-3.0
4,932,428	+		PP_4342	0.26	-3.2
4,932,429	-		PP_4342	0.26	-2.2
4,932,429	-		PP_4342	0.26	-2.5
4,932,545	+		PP_4342	0.40	-0.6
4,932,594	+		PP_4342	0.46	-1.2
4,932,594	+		PP_4342	0.46	-0.9
4,932,595	-		PP_4342	0.46	-0.4
4,932,595	-		PP_4342	0.46	-3.7
4,932,595	-		PP_4342	0.46	+0.7
4,932,865	-		PP_4342	0.78	-0.9
4,932,877	-		PP_4342	0.79	-3.6
4,932,981	+				+2.2
4,932,981	+				-4.0
4,933,027	+				+0.7
4,933,028	-				-1.6
4,933,041	+				-2.6
4,933,058	+				-0.3
4,933,058	+				-0.1
4,933,059	-				-2.3
4,933,059	-				-3.6
4,933,059	-				-2.7
4,933,059	-				+0.4
4,933,059	-				-2.0
4,933,059	-				-0.7
4,933,117	-				+0.5
4,933,166	+				-0.1
4,933,166	+				-4.2
4,933,167	-				-1.5
4,933,301	+		PP_4343	0.12	-0.1
4,933,301	+		PP_4343	0.12	-1.4
4,933,302	-		PP_4343	0.12	+0.2
4,933,302	-		PP_4343	0.12	+0.1
4,933,406	+		PP_4343	0.20	-2.0
4,933,406	+		PP_4343	0.20	-3.5
4,933,406	+		PP_4343	0.20	-4.4
4,933,406	+		PP_4343	0.20	-2.7
4,933,407	-		PP_4343	0.20	+1.4
4,933,407	-		PP_4343	0.20	+0.8
4,933,407	-		PP_4343	0.20	-2.2
4,933,415	+		PP_4343	0.21	-3.3
4,933,463	+		PP_4343	0.25	-2.8
4,933,464	-		PP_4343	0.25	+0.1
4,933,545	+		PP_4343	0.31	-3.7
4,933,546	-		PP_4343	0.31	-0.5
4,933,731	-		PP_4343	0.45	-0.4
4,934,312	+		PP_4343	0.90	-3.8
4,934,313	-		PP_4343	0.90	-2.5
4,934,439	+				+0.4
4,934,440	-				-1.6
4,934,512	-				+0.8
4,934,675	+		PP_4344	0.10	-0.6
4,934,675	+		PP_4344	0.10	-2.3
4,934,675	+		PP_4344	0.10	-0.1
4,934,675	+		PP_4344	0.10	-3.5
4,934,675	+		PP_4344	0.10	+0.2
4,934,676	-		PP_4344	0.10	+1.1
4,934,676	-		PP_4344	0.10	+0.9
4,934,676	-		PP_4344	0.10	+0.9
4,934,676	-		PP_4344	0.10	+0.1
4,934,727	-		PP_4344	0.13	+0.4
4,934,763	-		PP_4344	0.14	+0.6
4,934,772	+		PP_4344	0.15	+0.9
4,935,000	-		PP_4344	0.25	+1.7
4,935,209	+		PP_4344	0.35	+0.6
4,935,265	+		PP_4344	0.38	+0.8
4,935,265	+		PP_4344	0.38	+1.9