Strain Fitness in Pseudomonas putida KT2440 around PP_4300

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
4,890,053	-		PP_4299	0.39	+1.7
4,890,598	+				-0.9
4,890,599	-				+0.6
4,890,599	-				+0.2
4,890,681	+				+0.7
4,890,681	+				-2.5
4,890,681	+				-1.0
4,890,681	+				-1.1
4,890,681	+				+0.1
4,890,681	+				-0.7
4,890,681	+				-1.7
4,890,682	-				+1.0
4,890,682	-				+0.1
4,890,823	+				-0.5
4,890,823	+				+0.6
4,890,824	-				+0.2
4,890,824	-				-2.5
4,890,824	-				-0.2
4,890,824	-				-2.4
4,890,824	-				-0.6
4,890,924	-				-0.0
4,891,373	+		PP_4300	0.42	+0.4
4,891,374	-		PP_4300	0.42	+1.2
4,891,374	-		PP_4300	0.42	+1.0
4,891,374	-		PP_4300	0.42	+0.7
4,891,374	-		PP_4300	0.42	+1.2
4,891,379	+		PP_4300	0.42	+0.4
4,891,379	+		PP_4300	0.42	-3.4
4,891,379	+		PP_4300	0.42	-0.6
4,891,379	+		PP_4300	0.42	+0.9
4,891,379	+		PP_4300	0.42	+0.6
4,891,379	+		PP_4300	0.42	+0.7
4,891,379	+		PP_4300	0.42	+0.3
4,891,379	+				-1.7
4,891,379	+		PP_4300	0.42	+0.1
4,891,379	+		PP_4300	0.42	+0.9
4,891,380	-		PP_4300	0.42	+0.2
4,891,380	-		PP_4300	0.42	+0.9
4,891,396	-		PP_4300	0.44	+0.2
4,891,417	-		PP_4300	0.45	+2.4
4,891,875	-		PP_4300	0.81	+0.3
4,892,293	+		PP_4301	0.13	-0.4
4,892,746	+		PP_4301	0.45	-2.1
4,892,852	+		PP_4301	0.52	+0.9
4,892,909	+		PP_4301	0.56	-3.9