Strain Fitness in Pseudomonas putida KT2440 around PP_4260

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
4,843,783	+		PP_4259	0.44	-0.1
4,843,783	+		PP_4259	0.44	-0.5
4,843,784	-		PP_4259	0.45	-1.5
4,843,822	+		PP_4259	0.47	-0.2
4,843,822	+		PP_4259	0.47	-2.1
4,843,822	+		PP_4259	0.47	-1.3
4,843,823	-		PP_4259	0.47	-1.9
4,843,823	-		PP_4259	0.47	-0.2
4,843,823	-		PP_4259	0.47	-0.0
4,843,823	-		PP_4259	0.47	-0.7
4,843,823	-		PP_4259	0.47	+1.4
4,843,823	-		PP_4259	0.47	+0.5
4,843,886	-		PP_4259	0.52	-0.5
4,843,929	+		PP_4259	0.55	+0.1
4,843,936	+		PP_4259	0.55	+0.5
4,843,936	+		PP_4259	0.55	-0.3
4,843,936	+		PP_4259	0.55	+1.9
4,843,937	-		PP_4259	0.55	+0.8
4,844,089	+		PP_4259	0.66	+0.2
4,844,110	+		PP_4259	0.68	+0.5
4,844,173	+		PP_4259	0.72	-0.5
4,844,174	-		PP_4259	0.72	-2.1
4,844,305	+		PP_4259	0.81	+0.7
4,844,306	-		PP_4259	0.81	-0.9
4,844,306	-		PP_4259	0.81	+0.9
4,844,306	-		PP_4259	0.81	-0.1
4,844,318	+		PP_4259	0.82	+0.4
4,844,319	-		PP_4259	0.82	+1.0
4,844,347	+		PP_4259	0.84	-1.5
4,844,347	+		PP_4259	0.84	+0.4
4,844,347	+		PP_4259	0.84	-0.2
4,844,575	+				-1.5
4,844,575	+				-0.9
4,844,576	-				-3.5
4,844,614	+				-0.7
4,844,614	+				+0.8
4,844,614	+				-0.3
4,844,615	-				-2.8
4,844,615	-				+0.5
4,844,615	-				-0.5
4,844,615	-				+1.5
4,844,615	-				+1.5
4,844,728	+		PP_4260	0.27	-0.9
4,844,728	+		PP_4260	0.27	-3.6
4,844,728	+		PP_4260	0.27	-2.8
4,844,729	-		PP_4260	0.27	-0.7
4,844,729	-		PP_4260	0.27	-0.5
4,844,729	-		PP_4260	0.27	+0.8
4,844,729	-		PP_4260	0.27	-0.3
4,844,731	+		PP_4260	0.28	-0.9
4,844,732	-		PP_4260	0.28	+0.9
4,844,951	-		PP_4260	0.69	-0.5
4,844,951	-		PP_4260	0.69	-0.3
4,844,951	-		PP_4260	0.69	-0.6
4,845,023	+		PP_4260	0.83	-0.6
4,845,112	+				+0.8
4,845,113	-				-0.2
4,845,113	-				+0.2
4,845,160	+				-0.1
4,845,226	+				-0.1
4,845,227	-				+1.3
4,845,227	-				+0.5
4,845,227	-				-1.2
4,845,227	-				+0.7
4,845,250	+				+0.9
4,845,251	-				-1.7
4,845,402	-				-1.1
4,845,404	+				+1.7
4,845,404	+				+0.1
4,845,405	-				-0.1
4,845,405	-				-2.2
4,845,405	-				+0.3
4,845,405	-				-1.5
4,845,456	+				+0.7
4,845,456	+				+0.9
4,845,456	+				-1.3
4,845,457	-				-1.1
4,845,457	-				-3.8
4,845,457	-				+0.7
4,845,476	+				+0.3
4,845,675	+		PP_4261	0.17	-1.3
4,845,676	-		PP_4261	0.17	-3.1
4,845,717	-		PP_4261	0.19	-0.9
4,845,731	+		PP_4261	0.19	+0.3
4,845,732	-		PP_4261	0.19	+1.5
4,845,933	-		PP_4261	0.28	+0.9
4,846,073	+		PP_4261	0.33	-0.5
4,846,073	+		PP_4261	0.33	+0.7
4,846,074	-		PP_4261	0.33	+3.4