Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4164 and PP_4165 overlap by 4 nucleotides PP_4165 and PP_4166 are separated by 17 nucleotides PP_4166 and PP_4167 are separated by 162 nucleotides PP_4167 and PP_4168 overlap by 4 nucleotides
PP_4164: PP_4164 - Alpha/beta hydrolase, at 4,707,408 to 4,708,262
_4164
PP_4165: PP_4165 - conserved protein of unknown function, at 4,708,259 to 4,709,122
_4165
PP_4166: PP_4166 - conserved protein of unknown function, at 4,709,140 to 4,709,514
_4166
PP_4167: PP_4167 - Phosphohistidine phosphatase SixA, at 4,709,677 to 4,710,135
_4167
PP_4168: PP_4168 - conserved protein of unknown function, at 4,710,132 to 4,710,479
_4168
Position (kb) 4709
4710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4708.220 kb on + strand at 4708.347 kb on - strand, within PP_4165 at 4708.357 kb on - strand, within PP_4165 at 4708.357 kb on - strand, within PP_4165 at 4708.372 kb on + strand, within PP_4165 at 4708.372 kb on + strand, within PP_4165 at 4708.491 kb on + strand, within PP_4165 at 4708.492 kb on - strand, within PP_4165 at 4708.563 kb on - strand, within PP_4165 at 4708.566 kb on + strand, within PP_4165 at 4708.566 kb on + strand, within PP_4165 at 4708.566 kb on + strand, within PP_4165 at 4708.566 kb on + strand, within PP_4165 at 4708.566 kb on + strand, within PP_4165 at 4708.567 kb on - strand, within PP_4165 at 4708.620 kb on + strand, within PP_4165 at 4708.783 kb on - strand, within PP_4165 at 4708.962 kb on + strand, within PP_4165 at 4708.963 kb on - strand, within PP_4165 at 4708.995 kb on + strand, within PP_4165 at 4708.995 kb on + strand, within PP_4165 at 4708.996 kb on - strand, within PP_4165 at 4709.113 kb on + strand at 4709.113 kb on + strand at 4709.193 kb on - strand, within PP_4166 at 4709.240 kb on + strand, within PP_4166 at 4709.240 kb on + strand, within PP_4166 at 4709.320 kb on - strand, within PP_4166 at 4709.397 kb on - strand, within PP_4166 at 4709.433 kb on - strand, within PP_4166 at 4709.455 kb on - strand, within PP_4166 at 4709.561 kb on + strand at 4709.619 kb on + strand at 4709.811 kb on + strand, within PP_4167 at 4709.812 kb on - strand, within PP_4167 at 4709.812 kb on - strand, within PP_4167 at 4709.815 kb on + strand, within PP_4167 at 4709.815 kb on + strand, within PP_4167 at 4709.815 kb on + strand, within PP_4167 at 4709.815 kb on + strand, within PP_4167 at 4709.816 kb on - strand, within PP_4167 at 4709.816 kb on - strand, within PP_4167 at 4709.816 kb on - strand, within PP_4167 at 4709.816 kb on - strand, within PP_4167 at 4709.980 kb on + strand, within PP_4167 at 4709.980 kb on + strand, within PP_4167 at 4709.981 kb on - strand, within PP_4167 at 4709.984 kb on + strand, within PP_4167 at 4709.985 kb on - strand, within PP_4167 at 4709.985 kb on - strand, within PP_4167 at 4709.985 kb on - strand, within PP_4167 at 4710.337 kb on + strand, within PP_4168 at 4710.338 kb on - strand, within PP_4168 at 4710.338 kb on - strand, within PP_4168 at 4710.360 kb on + strand, within PP_4168 at 4710.360 kb on + strand, within PP_4168 at 4710.361 kb on - strand, within PP_4168 at 4710.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 4,708,220 + +0.3 4,708,347 - PP_4165 0.10 -0.6 4,708,357 - PP_4165 0.11 +1.5 4,708,357 - PP_4165 0.11 +0.1 4,708,372 + PP_4165 0.13 -1.2 4,708,372 + PP_4165 0.13 -0.5 4,708,491 + PP_4165 0.27 -0.0 4,708,492 - PP_4165 0.27 +0.7 4,708,563 - PP_4165 0.35 -2.9 4,708,566 + PP_4165 0.36 +1.9 4,708,566 + PP_4165 0.36 -0.5 4,708,566 + PP_4165 0.36 -0.8 4,708,566 + PP_4165 0.36 -0.3 4,708,566 + PP_4165 0.36 +0.7 4,708,567 - PP_4165 0.36 +2.2 4,708,620 + PP_4165 0.42 +0.1 4,708,783 - PP_4165 0.61 +0.7 4,708,962 + PP_4165 0.81 -1.8 4,708,963 - PP_4165 0.81 +0.1 4,708,995 + PP_4165 0.85 +0.2 4,708,995 + PP_4165 0.85 +0.5 4,708,996 - PP_4165 0.85 +0.4 4,709,113 + +0.2 4,709,113 + -0.5 4,709,193 - PP_4166 0.14 +0.4 4,709,240 + PP_4166 0.27 -0.3 4,709,240 + PP_4166 0.27 +0.5 4,709,320 - PP_4166 0.48 -2.1 4,709,397 - PP_4166 0.69 -2.3 4,709,433 - PP_4166 0.78 -1.7 4,709,455 - PP_4166 0.84 -0.4 4,709,561 + +0.1 4,709,619 + +0.0 4,709,811 + PP_4167 0.29 -0.3 4,709,812 - PP_4167 0.29 -1.2 4,709,812 - PP_4167 0.29 -0.8 4,709,815 + PP_4167 0.30 -0.2 4,709,815 + PP_4167 0.30 -0.5 4,709,815 + PP_4167 0.30 +1.1 4,709,815 + PP_4167 0.30 -0.3 4,709,816 - PP_4167 0.30 +0.7 4,709,816 - PP_4167 0.30 -0.1 4,709,816 - PP_4167 0.30 +1.0 4,709,816 - PP_4167 0.30 -0.8 4,709,980 + PP_4167 0.66 -1.6 4,709,980 + PP_4167 0.66 +1.4 4,709,981 - PP_4167 0.66 -0.2 4,709,984 + PP_4167 0.67 +0.4 4,709,985 - PP_4167 0.67 -0.2 4,709,985 - PP_4167 0.67 -2.8 4,709,985 - PP_4167 0.67 +0.2 4,710,337 + PP_4168 0.59 -0.4 4,710,338 - PP_4168 0.59 -0.0 4,710,338 - PP_4168 0.59 -0.9 4,710,360 + PP_4168 0.66 +0.1 4,710,360 + PP_4168 0.66 +0.0 4,710,361 - PP_4168 0.66 -0.2 4,710,471 - +0.6
Or see this region's nucleotide sequence