Strain Fitness in Pseudomonas putida KT2440 around PP_3762

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
4,291,937	+		PP_3761	0.81	-0.2
4,291,937	+		PP_3761	0.81	+0.1
4,291,938	-		PP_3761	0.81	+1.0
4,291,938	-		PP_3761	0.81	+0.3
4,291,938	-		PP_3761	0.81	-0.1
4,291,938	-		PP_3761	0.81	+0.3
4,291,938	-		PP_3761	0.81	-0.4
4,291,938	-		PP_3761	0.81	-0.6
4,291,976	+		PP_3761	0.82	-2.1
4,291,977	-		PP_3761	0.82	-0.5
4,292,162	+		PP_3761	0.88	-1.3
4,292,468	+				+0.6
4,292,468	+				+0.1
4,292,469	-				-0.3
4,292,532	+				-1.9
4,292,532	+				-0.6
4,292,604	-				-0.3
4,292,646	+				+0.3
4,292,668	+				-0.6
4,292,669	-				-1.9
4,292,679	-				-0.2
4,292,749	+				-0.1
4,292,749	+				-0.1
4,292,749	+				-1.2
4,292,750	-				-1.0
4,292,750	-				-1.2
4,292,750	-				+0.9
4,292,794	+				-0.1
4,292,803	+				+0.4
4,292,803	+				+0.2
4,292,804	-				+0.6
4,292,804	-				-0.3
4,292,868	+				+0.6
4,292,868	+				+0.6
4,292,869	-		PP_3762	0.10	-2.6
4,292,869	-		PP_3762	0.10	-0.6
4,292,906	+		PP_3762	0.21	-1.4
4,292,906	+		PP_3762	0.21	+0.1
4,292,949	+		PP_3762	0.33	-2.5
4,293,166	+				+1.3
4,293,166	+				+0.1
4,293,167	-				-0.9
4,293,210	-				+1.4
4,293,276	+				-1.4
4,293,276	+				-1.0
4,293,276	+				-0.3
4,293,276	+				+0.2
4,293,277	-				+0.1
4,293,277	-				-0.3
4,293,277	-				-0.1
4,293,277	-				+1.5
4,293,277	-				+0.8
4,293,277	-				-1.4
4,293,277	-				+0.4
4,293,280	+				-1.1
4,293,280	+				+1.0
4,293,281	-				-0.7
4,293,281	-				-0.4
4,293,299	-				-2.8
4,293,391	-		PP_3763	0.18	-0.2
4,293,402	+		PP_3763	0.20	-0.5
4,293,403	-		PP_3763	0.20	-2.5
4,293,403	-		PP_3763	0.20	-0.7
4,293,403	-		PP_3763	0.20	-2.4
4,293,403	-		PP_3763	0.20	-1.3
4,293,636	-		PP_3763	0.51	-0.3
4,293,636	-		PP_3763	0.51	+0.6
4,293,729	+		PP_3763	0.63	+1.6
4,293,774	+		PP_3763	0.69	+0.3
4,293,774	+		PP_3763	0.69	-0.1
4,293,825	+		PP_3763	0.76	+0.6
4,293,948	+				+4.4
4,293,948	+				+0.5
4,293,948	+				-1.4
4,293,948	+				-1.5
4,293,949	-				-0.8
4,293,949	-				-1.0
4,293,949	-				+0.4
4,294,052	+				-0.4
4,294,053	-				+2.4
4,294,053	-				+1.1
4,294,072	+				-0.6
4,294,073	-				-2.6
4,294,073	-				-0.4
4,294,073	-				-0.4
4,294,073	-				-1.8
4,294,073	-				-0.2
4,294,090	+				-0.4
4,294,090	+				+1.2
4,294,090	+				-0.8
4,294,091	-				-0.9
4,294,091	-				+0.8
4,294,138	+				+0.8
4,294,138	+				-0.4
4,294,138	+				-0.4
4,294,138	+				+1.1
4,294,139	-				-0.3
4,294,139	-				+0.6
4,294,139	-				+0.3
4,294,151	-				+0.2
4,294,161	-				+0.4
4,294,161	-				+1.2
4,294,170	+				-0.4
4,294,171	-				-3.5
4,294,171	-				+0.1
4,294,171	-				+0.8