Strain Fitness in Pseudomonas putida KT2440 around PP_3426

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
3,877,539	+		PP_3425	0.50	+0.2
3,877,539	+		PP_3425	0.50	-1.7
3,877,539	+		PP_3425	0.50	-1.3
3,877,539	+		PP_3425	0.50	-0.1
3,877,539	+		PP_3425	0.50	-3.9
3,877,539	+		PP_3425	0.50	-2.0
3,877,540	-		PP_3425	0.51	-0.2
3,877,540	-		PP_3425	0.51	-0.0
3,877,569	+		PP_3425	0.53	-0.5
3,877,569	+		PP_3425	0.53	+0.4
3,877,578	+		PP_3425	0.54	-1.4
3,877,578	+		PP_3425	0.54	-0.5
3,877,578	+		PP_3425	0.54	-3.6
3,877,579	-		PP_3425	0.54	-3.5
3,877,579	-		PP_3425	0.54	-2.4
3,877,627	-		PP_3425	0.58	-1.4
3,877,627	-		PP_3425	0.58	-0.5
3,877,767	+		PP_3425	0.69	-3.1
3,877,767	+				-1.5
3,877,991	-		PP_3425	0.87	-3.4
3,878,162	-				-0.1
3,878,400	+				-0.2
3,878,400	+				-2.7
3,878,400	+				-2.8
3,878,400	+				-3.4
3,878,400	+				-1.6
3,878,400	+				-3.1
3,878,400	+				-0.3
3,878,400	+				-0.8
3,878,401	-				-1.0
3,878,401	-				-3.9
3,878,401	-				-4.0
3,878,401	-				-3.9
3,878,401	-				-3.1
3,878,401	-				+0.8
3,878,401	-				-1.2
3,878,401	-				-4.9
3,878,401	-				-0.2
3,878,401	-				-3.1
3,878,628	+		PP_3426	0.15	-1.0
3,878,628	+		PP_3426	0.15	-3.3
3,878,628	+		PP_3426	0.15	-0.5
3,878,628	+		PP_3426	0.15	-0.5
3,878,628	+		PP_3426	0.15	-3.7
3,878,629	-		PP_3426	0.15	-2.8
3,878,629	-		PP_3426	0.15	-2.2
3,878,629	-		PP_3426	0.15	+0.7
3,878,629	-		PP_3426	0.15	-1.4
3,878,640	+		PP_3426	0.15	-0.9
3,878,640	+		PP_3426	0.15	-4.5
3,878,641	-		PP_3426	0.15	-0.4
3,878,686	+		PP_3426	0.16	-4.1
3,878,718	+		PP_3426	0.17	-3.5
3,878,998	-		PP_3426	0.26	-3.7
3,879,141	+		PP_3426	0.31	-4.4
3,879,141	+		PP_3426	0.31	-1.0
3,879,142	-		PP_3426	0.31	-1.3
3,879,142	-		PP_3426	0.31	-2.7
3,879,142	-		PP_3426	0.31	-3.6
3,879,153	+		PP_3426	0.31	-4.9
3,879,344	+		PP_3426	0.37	-1.7
3,879,345	-		PP_3426	0.37	-3.8
3,879,429	-		PP_3426	0.40	-4.8
3,879,533	-		PP_3426	0.43	-0.1
3,879,570	+		PP_3426	0.44	-1.2
3,879,570	+		PP_3426	0.44	-2.6
3,879,571	-		PP_3426	0.44	-2.0
3,879,571	-		PP_3426	0.44	-0.6
3,879,825	+		PP_3426	0.52	-4.3
3,879,850	-		PP_3426	0.53	-2.6
3,879,903	+		PP_3426	0.55	-0.4
3,879,903	+		PP_3426	0.55	-4.1
3,880,177	-		PP_3426	0.63	-2.0
3,880,278	+				-1.4
3,880,278	+		PP_3426	0.66	-3.1
3,880,278	+		PP_3426	0.66	-3.4
3,880,278	+		PP_3426	0.66	-0.4
3,880,279	-		PP_3426	0.66	-1.4
3,880,347	+		PP_3426	0.69	-2.0
3,880,347	+		PP_3426	0.69	-3.4
3,880,348	-		PP_3426	0.69	-0.1
3,880,348	-		PP_3426	0.69	-4.4
3,880,446	+		PP_3426	0.72	-3.1
3,880,447	-		PP_3426	0.72	-3.4
3,880,461	+		PP_3426	0.72	-3.7
3,880,462	-		PP_3426	0.72	-0.7
3,880,494	+		PP_3426	0.73	-1.6
3,880,645	-		PP_3426	0.78	-1.6
3,880,645	-		PP_3426	0.78	-3.0
3,880,693	-		PP_3426	0.79	-0.6
3,880,806	-		PP_3426	0.83	-0.5
3,880,834	+		PP_3426	0.84	-4.0
3,880,834	+		PP_3426	0.84	-2.2
3,880,834	+		PP_3426	0.84	-1.5
3,880,835	-		PP_3426	0.84	-2.3
3,880,835	-		PP_3426	0.84	-3.9
3,880,945	+		PP_3426	0.87	-1.8
3,881,867	+		PP_3427	0.37	-0.1
3,882,114	+		PP_3427	0.55	-0.5