Strain Fitness in Pseudomonas putida KT2440 around PP_3425

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
3,875,971	+		PP_3424	0.38	+1.5
3,876,029	+		PP_3424	0.43	-0.4
3,876,125	+		PP_3424	0.51	-0.2
3,876,125	+		PP_3424	0.51	+0.4
3,876,126	-		PP_3424	0.51	-0.6
3,876,248	+		PP_3424	0.61	-0.1
3,876,249	-				+0.6
3,876,311	-		PP_3424	0.66	-3.2
3,876,311	-		PP_3424	0.66	+1.9
3,876,311	-		PP_3424	0.66	+0.7
3,876,682	+				+1.5
3,876,682	+				+1.2
3,876,682	+				+0.3
3,876,682	+				-1.6
3,876,682	+				+0.5
3,876,683	-				-0.5
3,876,683	-				-0.1
3,876,683	-				+1.0
3,876,683	-				-1.4
3,876,683	-				-0.1
3,876,711	+				-0.1
3,876,797	+				+0.6
3,876,797	+				+0.5
3,876,798	-				+0.9
3,876,812	+				-0.7
3,876,813	-				-0.4
3,876,827	+				-4.2
3,876,827	+				-0.3
3,876,828	-				-2.2
3,876,890	+				+0.7
3,876,890	+				-1.2
3,876,891	-				-4.1
3,876,891	-				-5.0
3,876,891	-				-1.9
3,876,891	-				-0.1
3,876,891	-				+0.2
3,876,893	+				-2.6
3,876,893	+				-4.0
3,876,893	+				-0.3
3,876,894	-				+0.1
3,876,894	-				-1.1
3,877,024	+				-2.2
3,877,025	-				-2.6
3,877,539	+		PP_3425	0.50	+0.2
3,877,539	+		PP_3425	0.50	-1.7
3,877,539	+		PP_3425	0.50	-1.3
3,877,539	+		PP_3425	0.50	-0.1
3,877,539	+		PP_3425	0.50	-3.9
3,877,539	+		PP_3425	0.50	-2.0
3,877,540	-		PP_3425	0.51	-0.2
3,877,540	-		PP_3425	0.51	-0.0
3,877,569	+		PP_3425	0.53	-0.5
3,877,569	+		PP_3425	0.53	+0.4
3,877,578	+		PP_3425	0.54	-1.4
3,877,578	+		PP_3425	0.54	-0.5
3,877,578	+		PP_3425	0.54	-3.6
3,877,579	-		PP_3425	0.54	-3.5
3,877,579	-		PP_3425	0.54	-2.4
3,877,627	-		PP_3425	0.58	-1.4
3,877,627	-		PP_3425	0.58	-0.5
3,877,767	+		PP_3425	0.69	-3.1
3,877,767	+				-1.5
3,877,991	-		PP_3425	0.87	-3.4
3,878,162	-				-0.1
3,878,400	+				-0.2
3,878,400	+				-2.7
3,878,400	+				-2.8
3,878,400	+				-3.4
3,878,400	+				-1.6
3,878,400	+				-3.1
3,878,400	+				-0.3
3,878,400	+				-0.8
3,878,401	-				-1.0
3,878,401	-				-3.9
3,878,401	-				-4.0
3,878,401	-				-3.9
3,878,401	-				-3.1
3,878,401	-				+0.8
3,878,401	-				-1.2
3,878,401	-				-4.9
3,878,401	-				-0.2
3,878,401	-				-3.1
3,878,628	+		PP_3426	0.15	-1.0
3,878,628	+		PP_3426	0.15	-3.3
3,878,628	+		PP_3426	0.15	-0.5
3,878,628	+		PP_3426	0.15	-0.5
3,878,628	+		PP_3426	0.15	-3.7
3,878,629	-		PP_3426	0.15	-2.8
3,878,629	-		PP_3426	0.15	-2.2
3,878,629	-		PP_3426	0.15	+0.7
3,878,629	-		PP_3426	0.15	-1.4
3,878,640	+		PP_3426	0.15	-0.9
3,878,640	+		PP_3426	0.15	-4.5
3,878,641	-		PP_3426	0.15	-0.4
3,878,686	+		PP_3426	0.16	-4.1
3,878,718	+		PP_3426	0.17	-3.5
3,878,998	-		PP_3426	0.26	-3.7
3,879,141	+		PP_3426	0.31	-4.4
3,879,141	+		PP_3426	0.31	-1.0
3,879,142	-		PP_3426	0.31	-1.3
3,879,142	-		PP_3426	0.31	-2.7
3,879,142	-		PP_3426	0.31	-3.6
3,879,153	+		PP_3426	0.31	-4.9