Strain Fitness in Pseudomonas putida KT2440 around PP_3296

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
3,728,552	-		PP_3294	0.47	-2.4
3,728,706	+		PP_3294	0.65	-0.2
3,728,768	-		PP_3294	0.72	-0.2
3,728,874	+		PP_3294	0.84	+0.2
3,728,875	-		PP_3294	0.84	-1.9
3,729,027	+				-0.7
3,729,085	-		PP_3295	0.11	+0.4
3,729,334	-		PP_3295	0.63	+0.0
3,729,354	-		PP_3295	0.67	-0.5
3,729,371	-		PP_3295	0.71	-1.1
3,729,492	+				-0.4
3,729,493	-				+1.0
3,729,494	+				+0.0
3,729,494	+				-0.0
3,729,495	-				-0.1
3,729,562	-		PP_3296	0.11	+0.2
3,729,661	-		PP_3296	0.34	+0.7
3,729,661	-		PP_3296	0.34	+0.8
3,729,700	+		PP_3296	0.43	-0.4
3,729,701	-		PP_3296	0.43	-2.9
3,729,701	-		PP_3296	0.43	-0.1
3,729,701	-		PP_3296	0.43	+1.0
3,729,721	+		PP_3296	0.48	+0.8
3,729,721	+		PP_3296	0.48	-0.5
3,729,722	-		PP_3296	0.48	-4.0
3,729,726	+		PP_3296	0.49	+0.9
3,729,727	-		PP_3296	0.49	+0.6
3,729,727	-		PP_3296	0.49	+0.2
3,729,727	-		PP_3296	0.49	+1.6
3,729,810	+		PP_3296	0.69	-1.0
3,729,811	-		PP_3296	0.69	+0.8
3,729,835	-		PP_3296	0.74	+0.3
3,729,901	+		PP_3296	0.89	+0.5
3,729,901	+		PP_3296	0.89	+2.8
3,729,901	+		PP_3296	0.89	+0.5
3,729,999	-				+0.8
3,730,005	-				-0.1
3,730,016	-				-0.1
3,730,028	+				+0.6
3,730,043	+				-0.0
3,730,047	-				-0.8
3,730,049	-				-0.2
3,730,083	-				-1.0
3,730,083	-				-0.7
3,730,119	+				+0.4
3,730,173	+				-0.5
3,730,174	-				-0.0
3,730,174	-				-1.1
3,730,215	-				-0.0
3,730,218	-				-0.1
3,730,218	-				-1.0
3,730,218	-				-0.3
3,730,218	-				+0.5
3,730,222	+				+0.9
3,730,223	-				-2.4
3,730,223	-				+1.2
3,730,240	-		PP_3297	0.12	-0.6
3,730,339	+		PP_3297	0.31	+0.5
3,730,355	+		PP_3297	0.34	+1.4
3,730,356	-		PP_3297	0.34	-1.7
3,730,357	+		PP_3297	0.34	-0.1
3,730,395	-		PP_3297	0.41	+0.3
3,730,395	-		PP_3297	0.41	-0.7
3,730,395	-		PP_3297	0.41	-1.7
3,730,481	-		PP_3297	0.58	-0.0
3,730,481	-		PP_3297	0.58	-0.2
3,730,562	+				+0.5
3,730,643	+		PP_3297	0.88	+0.1
3,730,643	+				-0.7
3,730,643	+		PP_3297	0.88	-0.8
3,730,643	+		PP_3297	0.88	+0.3
3,730,644	-		PP_3297	0.88	-0.9
3,730,644	-		PP_3297	0.88	-0.7
3,730,644	-		PP_3297	0.88	+0.2
3,730,683	-				-0.4
3,730,683	-				+1.9
3,730,683	-				-0.4
3,730,683	-				+0.6
3,730,742	+				+1.0
3,730,768	-				+0.1
3,730,816	+				-1.6
3,730,816	+				-0.2
3,730,817	-				-0.4
3,730,817	-				+0.8
3,730,817	-				+0.6
3,730,823	+				+0.9
3,730,823	+				+1.3
3,730,823	+				+0.6
3,730,824	-				-0.7
3,730,824	-				-1.3
3,730,842	+				-0.8
3,730,842	+				+0.6
3,730,843	-				+0.8
3,730,843	-				-0.8
3,730,843	-				+0.0