Strain Fitness in Pseudomonas putida KT2440 around PP_3204

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
3,636,457	+		PP_3203	0.32	+0.6
3,636,458	-		PP_3203	0.32	-0.5
3,636,587	-		PP_3203	0.43	+0.5
3,636,587	-		PP_3203	0.43	+1.2
3,636,587	-		PP_3203	0.43	-1.0
3,636,707	+		PP_3203	0.53	-0.1
3,636,708	-		PP_3203	0.53	-1.9
3,636,780	-		PP_3203	0.59	+0.6
3,636,780	-		PP_3203	0.59	+0.7
3,636,780	-		PP_3203	0.59	-0.6
3,636,788	+		PP_3203	0.60	-0.6
3,636,788	+		PP_3203	0.60	+0.2
3,636,789	-		PP_3203	0.60	-0.6
3,636,789	-		PP_3203	0.60	+0.4
3,637,299	-				+0.5
3,637,386	-				+0.1
3,637,464	+				+0.8
3,637,464	+				+0.1
3,637,465	-				-0.1
3,637,563	-		PP_3204	0.24	-1.6
3,637,563	-		PP_3204	0.24	-1.9
3,637,817	+		PP_3204	0.67	-0.3
3,637,818	-		PP_3204	0.68	+0.2
3,638,161	+		PP_3205	0.16	-0.8
3,638,345	-		PP_3205	0.34	+0.2
3,638,345	-		PP_3205	0.34	+0.4
3,638,387	+		PP_3205	0.38	-1.1
3,638,388	-		PP_3205	0.39	+1.3
3,638,781	-		PP_3205	0.78	-0.2