Strain Fitness in Pseudomonas putida KT2440 around PP_2750

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
3,131,841	+		PP_2748	0.90	-1.4
3,131,841	+		PP_2748	0.90	-1.4
3,132,003	+				-2.1
3,132,003	+				-1.0
3,132,122	-		PP_2749	0.23	-1.5
3,132,269	-		PP_2749	0.40	+0.5
3,132,574	+		PP_2749	0.74	+0.5
3,132,574	+		PP_2749	0.74	-0.5
3,132,682	-		PP_2749	0.87	+1.3
3,132,751	-				+2.4
3,132,751	-				+0.4
3,132,751	-				+0.7
3,132,751	-				+1.0
3,132,797	-				+0.3
3,133,265	-		PP_2750	0.43	-0.7
3,133,484	-		PP_2750	0.64	-0.3
3,133,484	-		PP_2750	0.64	-0.4
3,133,517	-		PP_2750	0.67	-1.3
3,133,815	-				-0.3
3,133,815	-				-1.5
3,133,815	-				-1.7
3,133,842	+				-4.3
3,134,066	-				-0.5
3,134,080	+				+0.1
3,134,131	+		PP_2751	0.14	+1.0
3,134,234	-				-0.6
3,134,443	+		PP_2751	0.37	+0.2
3,134,444	-		PP_2751	0.37	+0.4
3,134,444	-		PP_2751	0.37	-1.0
3,134,444	-		PP_2751	0.37	-2.0
3,134,518	+		PP_2751	0.43	+0.7
3,134,563	+		PP_2751	0.46	+2.3
3,134,564	-		PP_2751	0.46	-1.1
3,134,697	-		PP_2751	0.56	+0.4
3,134,867	+				-1.9
3,134,867	+		PP_2751	0.69	+1.0
3,134,868	-		PP_2751	0.69	-0.8
3,134,868	-		PP_2751	0.69	-0.6
3,134,868	-		PP_2751	0.69	+0.1