Strain Fitness in Pseudomonas putida KT2440 around PP_2681

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
3,069,851	+		PP_2680	0.62	-2.6
3,069,852	-		PP_2680	0.62	-1.3
3,069,956	+		PP_2680	0.69	-0.5
3,070,062	-		PP_2680	0.76	+0.7
3,070,062	-		PP_2680	0.76	+0.8
3,070,062	-		PP_2680	0.76	-3.2
3,070,062	-		PP_2680	0.76	-1.5
3,070,286	+				+0.3
3,070,287	-				+1.1
3,070,287	-				+0.1
3,070,322	+				+0.1
3,070,374	-				-0.3
3,070,403	+				-1.3
3,070,404	-				-0.4
3,070,557	-				+0.6
3,070,588	-				-1.0
3,070,671	+				+0.6
3,070,681	+				-1.0
3,070,681	+				+1.0
3,070,683	+				+0.6
3,070,717	+				+0.3
3,070,718	-				+0.4
3,070,777	+				-0.4
3,070,778	-				-3.9
3,070,876	+		PP_2681	0.33	-0.6
3,070,877	-		PP_2681	0.33	-1.5
3,071,051	+				+0.7
3,071,052	-				-0.5
3,071,104	+				-0.6
3,071,104	+				-0.0
3,071,105	-				+0.5
3,071,105	-				-0.7
3,071,131	+				-0.9
3,071,131	+				+0.2
3,071,132	-				+0.6
3,071,143	+				+0.8
3,071,261	-				+0.6
3,071,343	+		PP_2682	0.17	-0.5
3,071,344	-		PP_2682	0.17	+1.6
3,071,353	-		PP_2682	0.18	+0.4
3,071,409	+		PP_2682	0.22	-1.1
3,071,410	-		PP_2682	0.23	-0.9
3,071,862	-		PP_2682	0.61	+1.1
3,071,867	+		PP_2682	0.62	-0.1
3,071,868	-		PP_2682	0.62	+0.6
3,071,868	-		PP_2682	0.62	-0.2