Strain Fitness in Pseudomonas putida KT2440 around PP_2472

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
2,816,306	+		PP_2471	0.18	-4.1
2,816,307	-		PP_2471	0.19	-1.0
2,816,533	-				-1.1
2,816,533	-				-2.7
2,816,584	+		PP_2472	0.14	-3.9
2,816,585	-		PP_2472	0.15	-0.5
2,816,585	-		PP_2472	0.15	-1.1
2,816,585	-		PP_2472	0.15	-2.7
2,816,698	+		PP_2472	0.46	-2.4
2,816,701	+		PP_2472	0.47	-2.0
2,816,749	+		PP_2472	0.61	+0.1
2,816,805	+		PP_2472	0.76	+1.2
2,816,805	+		PP_2472	0.76	-0.2
2,816,887	+				-0.0
2,817,228	+				-0.1
2,817,229	-				-0.5
2,817,251	+				+0.4
2,817,256	+				-1.2
2,817,256	+				+0.6
2,817,256	+				+0.5
2,817,257	-				-1.0
2,817,285	-				-2.4
2,817,348	+		PP_5526	0.17	-3.6
2,817,348	+		PP_5526	0.17	+0.3
2,817,348	+		PP_5526	0.17	-0.9
2,817,349	-		PP_5526	0.17	-1.0
2,817,403	+		PP_5526	0.24	+1.1
2,817,404	-		PP_5526	0.24	-4.1
2,817,485	-				+1.4
2,817,627	-		PP_5526	0.50	-2.0
2,817,727	+		PP_5526	0.62	+1.1
2,817,727	+		PP_5526	0.62	+0.2
2,817,727	+		PP_5526	0.62	+0.4
2,817,749	-		PP_5526	0.65	-0.1
2,817,846	-		PP_5526	0.76	+0.7
2,817,846	-		PP_5526	0.76	-0.5
2,817,846	-		PP_5526	0.76	-0.2
2,817,846	-		PP_5526	0.76	-1.1
2,817,848	+		PP_5526	0.77	+0.3
2,817,848	+		PP_5526	0.77	+0.4