Strain Fitness in Pseudomonas putida KT2440 around PP_2355

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
2,686,964	-		PP_2354	0.68	-2.5
2,686,964	-		PP_2354	0.68	+0.1
2,686,964	-		PP_2354	0.68	-0.2
2,687,141	+		PP_2354	0.76	-4.7
2,687,154	-		PP_2354	0.76	+0.8
2,687,347	+		PP_2354	0.84	+0.3
2,687,408	+		PP_2354	0.87	-0.5
2,687,408	+		PP_2354	0.87	-0.3
2,687,409	-		PP_2354	0.87	+0.9
2,687,457	-		PP_2354	0.89	-0.7
2,687,473	+		PP_2354	0.90	+0.7
2,687,474	-		PP_2354	0.90	-0.4
2,687,474	-		PP_2354	0.90	-0.3
2,687,567	+				+0.3
2,687,661	+				+0.2
2,687,662	-				+0.3
2,687,698	+				-0.7
2,687,698	+				-0.1
2,687,699	-				+1.7
2,687,801	+		PP_2355	0.14	-2.9
2,687,859	+		PP_2355	0.27	+0.0
2,687,860	-		PP_2355	0.27	-0.8
2,687,860	-		PP_2355	0.27	-1.6
2,687,860	-		PP_2355	0.27	+0.1
2,687,860	-		PP_2355	0.27	-3.9
2,688,011	+		PP_2355	0.60	-1.3
2,688,048	+		PP_2355	0.68	-0.2
2,688,069	+		PP_2355	0.72	-2.1
2,688,070	-		PP_2355	0.73	-0.2
2,688,202	+				+1.1
2,688,217	+				-0.6
2,688,217	+				+0.1
2,688,217	+				-0.2
2,688,218	-				-0.2
2,688,314	+				+0.6
2,688,315	-				+1.7
2,688,315	-				-0.6
2,688,315	-				-0.0
2,688,458	+		PP_2356	0.11	+0.2
2,688,459	-		PP_2356	0.11	+0.1
2,688,488	-				-1.4
2,688,501	+		PP_2356	0.13	+0.7
2,688,501	+		PP_2356	0.13	-0.1
2,688,502	-		PP_2356	0.13	-0.3
2,688,609	+		PP_2356	0.18	-0.7
2,688,609	+		PP_2356	0.18	+0.3
2,688,610	-		PP_2356	0.18	-2.0
2,688,751	+		PP_2356	0.24	-1.3
2,688,818	-		PP_2356	0.27	+0.9
2,688,867	+		PP_2356	0.29	+0.2
2,688,975	-		PP_2356	0.34	-0.7
2,689,119	-		PP_2356	0.40	+0.9
2,689,119	-		PP_2356	0.40	-0.0
2,689,146	+		PP_2356	0.41	+0.8
2,689,146	+		PP_2356	0.41	+1.6
2,689,147	-		PP_2356	0.41	+0.3