Strain Fitness in Pseudomonas putida KT2440 around PP_2297

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
2,623,776	+		PP_2295	0.63	+0.6
2,623,777	-		PP_2295	0.63	+1.5
2,623,777	-		PP_2295	0.63	+1.1
2,623,830	+		PP_2295	0.72	-0.9
2,623,905	-		PP_2295	0.85	-0.2
2,623,959	+				+0.8
2,623,972	-				+0.1
2,623,982	+				-0.1
2,623,982	+				-0.6
2,623,983	-				-0.1
2,623,983	-				-2.6
2,623,983	-				+1.1
2,624,041	-				-0.3
2,624,121	+				-0.3
2,624,122	-				+0.2
2,624,397	+				+1.4
2,624,397	+				+0.2
2,624,401	+				-0.0
2,624,401	+				-1.7
2,624,401	+				-0.4
2,624,747	+				-0.8
2,624,749	+				+0.3
2,624,749	+				-0.9
2,624,749	+				-0.3
2,624,749	+				-2.5
2,624,749	+				-0.2
2,624,749	+				+0.9
2,624,750	-				+0.0
2,624,750	-				-0.7
2,624,764	-				-1.2
2,624,767	+				+0.4
2,624,767	+				+0.0
2,624,767	+				+0.1
2,624,771	+				-1.4
2,624,772	-				+0.2
2,624,801	-				-0.0
2,624,848	-				-0.0
2,624,848	-				+1.0
2,624,855	+		PP_2297	0.11	-0.4
2,624,855	+		PP_2297	0.11	+0.2
2,624,874	-		PP_2297	0.12	+0.1
2,624,886	-		PP_2297	0.13	+0.4
2,624,886	-		PP_2297	0.13	+1.0
2,624,886	-		PP_2297	0.13	+0.4
2,625,150	+		PP_2297	0.38	+0.9
2,625,150	+		PP_2297	0.38	+0.3
2,625,150	+		PP_2297	0.38	+0.8
2,625,150	+		PP_2297	0.38	-0.5
2,625,151	-		PP_2297	0.38	-1.6
2,625,201	+		PP_2297	0.43	+0.8
2,625,201	+		PP_2297	0.43	-1.2
2,625,201	+		PP_2297	0.43	-0.0
2,625,201	+		PP_2297	0.43	+0.1
2,625,201	+		PP_2297	0.43	+0.1
2,625,202	-		PP_2297	0.43	+0.4
2,625,202	-		PP_2297	0.43	+0.1
2,625,202	-		PP_2297	0.43	+1.3
2,625,214	-		PP_2297	0.44	-0.2
2,625,269	+		PP_2297	0.49	+0.1
2,625,269	+		PP_2297	0.49	-2.0
2,625,270	-		PP_2297	0.49	+0.4
2,625,400	+		PP_2297	0.61	-2.4
2,625,444	+		PP_2297	0.65	-0.5
2,625,550	+		PP_2297	0.75	-0.2
2,625,550	+		PP_2297	0.75	+0.5
2,625,551	-		PP_2297	0.75	-2.4
2,625,737	+				+0.2
2,625,799	+				+0.4
2,625,799	+				-0.8
2,625,799	+				-0.8
2,625,799	+				+0.6
2,625,799	+				-1.8
2,625,799	+				-0.7
2,625,800	-				+0.6
2,625,800	-				+1.7
2,625,800	-				+1.0
2,625,800	-				-0.3
2,625,810	+				+0.3
2,625,811	-				-3.9
2,625,811	-				-0.2
2,625,860	-				+0.1
2,625,860	-				+0.9
2,625,860	-				+1.1
2,625,951	+				-0.7
2,625,951	+				+0.4
2,625,951	+				-1.6
2,625,951	+				+0.3
2,625,951	+				+0.6
2,625,952	-				+0.6
2,625,952	-				-0.1
2,625,952	-				+0.1
2,625,991	+				-0.4
2,625,992	-				-2.4
2,626,057	+				+0.2
2,626,094	+				+0.0
2,626,094	+				+0.6
2,626,095	-				+1.2
2,626,102	+				+0.2
2,626,119	-				-0.5
2,626,142	-		PP_t40	0.26	-1.3
2,626,198	+				-0.5
2,626,302	-				+0.1
2,626,302	-				+1.7
2,626,302	-				+0.2
2,626,536	-		PP_2298	0.56	+2.8
2,626,653	+				-0.5
2,626,707	+				-0.5
2,626,724	-				+1.1