Strain Fitness in Pseudomonas putida KT2440 around PP_2214

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
2,524,035	+		PP_2213	0.45	+1.3
2,524,035	+		PP_2213	0.45	-3.3
2,524,036	-		PP_2213	0.45	+0.9
2,524,038	+		PP_2213	0.45	-0.6
2,524,038	+		PP_2213	0.45	-0.6
2,524,039	-		PP_2213	0.45	+0.1
2,524,039	-		PP_2213	0.45	-0.1
2,524,083	+		PP_2213	0.48	-0.0
2,524,083	+		PP_2213	0.48	-0.6
2,524,083	+		PP_2213	0.48	+0.4
2,524,083	+		PP_2213	0.48	+0.6
2,524,084	-		PP_2213	0.48	-0.9
2,524,084	-		PP_2213	0.48	+0.5
2,524,084	-		PP_2213	0.48	+0.3
2,524,433	+		PP_2213	0.68	+1.3
2,524,545	+		PP_2213	0.75	-0.3
2,524,545	+		PP_2213	0.75	+0.5
2,524,545	+		PP_2213	0.75	-0.3
2,524,548	+		PP_2213	0.75	-0.9
2,524,548	+		PP_2213	0.75	-2.4
2,524,548	+		PP_2213	0.75	+0.1
2,524,549	-		PP_2213	0.75	-2.8
2,524,549	-		PP_2213	0.75	-0.7
2,524,727	+		PP_2213	0.86	+1.4
2,524,837	-				+0.1
2,524,837	-				-0.3
2,524,985	+				+0.4
2,524,986	-				+0.1
2,524,993	-				-0.7
2,525,155	-		PP_2214	0.23	+0.2
2,525,156	+		PP_2214	0.23	-0.6
2,525,311	+				+4.3
2,525,431	+		PP_2214	0.59	-1.9
2,525,432	-		PP_2214	0.59	-0.5
2,525,458	+		PP_2214	0.62	-2.0
2,525,568	+		PP_2214	0.77	-0.8
2,525,569	-		PP_2214	0.77	-2.8
2,525,594	+		PP_2214	0.80	-1.1
2,525,595	-		PP_2214	0.80	-0.5
2,525,595	-		PP_2214	0.80	-3.1
2,525,653	+		PP_2214	0.88	-1.0
2,525,743	+				+0.1
2,525,744	-				-0.5
2,525,920	+		PP_2215	0.14	-0.1
2,525,921	-		PP_2215	0.14	-2.2
2,525,921	-		PP_2215	0.14	-1.4
2,526,041	+		PP_2215	0.24	-1.8
2,526,135	+		PP_2215	0.32	-2.1
2,526,246	-		PP_2215	0.41	-1.4
2,526,538	+		PP_2215	0.65	-0.3
2,526,539	-		PP_2215	0.65	-0.9
2,526,539	-		PP_2215	0.65	-0.9