Strain Fitness in Pseudomonas putida KT2440 around PP_2210

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
2,515,762	-		PP_2209	0.31	+0.0
2,515,762	-		PP_2209	0.31	-0.4
2,515,762	-		PP_2209	0.31	-0.9
2,515,762	-		PP_2209	0.31	-1.1
2,515,839	+		PP_2209	0.38	+0.3
2,515,839	+		PP_2209	0.38	-0.1
2,515,839	+		PP_2209	0.38	+0.4
2,515,840	-		PP_2209	0.38	+0.4
2,516,214	+		PP_2209	0.72	+0.5
2,516,215	-		PP_2209	0.72	+0.5
2,516,215	-		PP_2209	0.72	+1.5
2,516,569	+				-0.1
2,516,569	+				+1.5
2,516,569	+				-1.0
2,516,570	-				+0.3
2,516,639	+				+0.1
2,516,640	-				-0.2
2,516,656	+				+0.1
2,516,766	+		PP_2210	0.15	-3.0
2,516,790	-		PP_2210	0.17	-0.5
2,516,790	-		PP_2210	0.17	-1.0
2,517,283	+		PP_2210	0.74	-0.1
2,517,283	+		PP_2210	0.74	-1.5
2,517,283	+		PP_2210	0.74	-0.9
2,517,283	+		PP_2210	0.74	-4.0
2,517,499	+				+0.9
2,517,499	+				-1.1
2,517,500	-				-1.1
2,517,538	+				-0.7
2,517,538	+				-0.6
2,517,539	-				-1.4
2,517,539	-				-1.5
2,517,547	+				+0.3
2,517,547	+				-4.2
2,517,547	+				+0.6
2,517,547	+				-0.9
2,517,547	+				+0.5
2,517,548	-				+1.2
2,517,548	-				+0.4
2,517,548	-				-2.1
2,517,550	+				+0.6
2,517,550	+				-0.4
2,517,550	+				+0.3
2,517,550	+				+0.9
2,517,550	+				+0.5
2,517,735	-		PP_2211	0.15	+0.2
2,517,958	+		PP_2211	0.37	-0.5
2,517,959	-		PP_2211	0.37	-1.5
2,517,995	+		PP_2211	0.40	+0.2
2,517,996	-		PP_2211	0.41	+0.8
2,518,175	+		PP_2211	0.58	+0.0
2,518,176	-		PP_2211	0.58	-1.9
2,518,244	-		PP_2211	0.65	+0.6
2,518,256	+		PP_2211	0.66	-0.8
2,518,257	-		PP_2211	0.66	-0.1
2,518,407	-		PP_2211	0.81	+0.7
2,518,407	-		PP_2211	0.81	-0.8
2,518,428	+		PP_2211	0.83	-0.9
2,518,429	-		PP_2211	0.83	-1.0