Strain Fitness in Pseudomonas putida KT2440 around PP_1935

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
2,180,754	-				+0.0
2,180,754	-				-0.9
2,180,754	-				-2.1
2,180,764	+				+0.9
2,180,764	+				+0.3
2,180,764	+				-0.5
2,180,765	-				-3.6
2,180,765	-				-1.1
2,180,776	+				-0.7
2,180,821	-				+0.2
2,180,849	-		PP_1934	0.11	+0.3
2,180,849	-		PP_1934	0.11	-0.2
2,180,883	-		PP_1934	0.16	-0.3
2,180,883	-		PP_1934	0.16	+0.9
2,180,883	-		PP_1934	0.16	+0.5
2,180,907	+		PP_1934	0.19	-1.0
2,180,907	+		PP_1934	0.19	+0.4
2,180,907	+		PP_1934	0.19	-1.4
2,180,907	+		PP_1934	0.19	+0.7
2,180,908	-		PP_1934	0.20	-0.9
2,180,908	-		PP_1934	0.20	-0.7
2,180,946	+		PP_1934	0.25	-0.6
2,180,946	+		PP_1934	0.25	+0.2
2,180,946	+		PP_1934	0.25	-1.0
2,180,946	+		PP_1934	0.25	+2.6
2,180,946	+		PP_1934	0.25	+0.9
2,180,947	-		PP_1934	0.26	-1.2
2,180,947	-		PP_1934	0.26	+0.1
2,180,947	-		PP_1934	0.26	+1.0
2,180,950	+		PP_1934	0.26	-0.3
2,180,950	+		PP_1934	0.26	+1.1
2,180,951	-		PP_1934	0.26	+0.3
2,180,951	-		PP_1934	0.26	-2.6
2,180,951	-		PP_1934	0.26	-0.3
2,180,951	-		PP_1934	0.26	+0.7
2,180,951	-		PP_1934	0.26	+0.0
2,180,987	+		PP_1934	0.32	+0.7
2,180,987	+		PP_1934	0.32	+1.0
2,180,987	+		PP_1934	0.32	+0.1
2,180,987	+		PP_1934	0.32	+0.3
2,180,988	-		PP_1934	0.32	-1.4
2,180,988	-		PP_1934	0.32	+1.6
2,180,988	-		PP_1934	0.32	-0.4
2,180,988	-		PP_1934	0.32	+0.2
2,180,988	-		PP_1934	0.32	-1.7
2,180,988	-		PP_1934	0.32	+1.0
2,180,988	-		PP_1934	0.32	-0.3
2,180,988	-		PP_1934	0.32	+0.3
2,180,988	-		PP_1934	0.32	+0.3
2,180,988	-		PP_1934	0.32	-2.3
2,180,988	-		PP_1934	0.32	-0.5
2,180,988	-		PP_1934	0.32	+0.2
2,180,989	+		PP_1934	0.32	+0.2
2,180,989	+		PP_1934	0.32	+0.2
2,180,989	+		PP_1934	0.32	-3.1
2,180,989	+				+2.8
2,180,990	-		PP_1934	0.32	+1.2
2,181,027	+		PP_1934	0.38	-0.8
2,181,031	+		PP_1934	0.38	-0.9
2,181,031	+		PP_1934	0.38	+0.2
2,181,032	-		PP_1934	0.39	+0.4
2,181,032	-		PP_1934	0.39	+0.3
2,181,038	+		PP_1934	0.39	+1.2
2,181,038	+		PP_1934	0.39	+2.1
2,181,068	+		PP_1934	0.44	-1.8
2,181,068	+		PP_1934	0.44	+0.0
2,181,068	+		PP_1934	0.44	+0.7
2,181,069	-		PP_1934	0.44	-2.1
2,181,182	+		PP_1934	0.61	+0.8
2,181,183	-		PP_1934	0.61	-0.1
2,181,183	-		PP_1934	0.61	-0.8
2,181,212	-		PP_1934	0.66	-0.4
2,181,368	+		PP_1934	0.90	+0.8
2,181,369	-		PP_1934	0.90	+0.7
2,181,375	-				+0.9
2,181,385	+				-0.4
2,181,385	+				+0.0
2,181,386	-				+0.1
2,181,556	+				-0.1
2,181,557	-				+1.9
2,181,557	-				-0.0
2,181,572	+				+0.0
2,181,572	+				+1.2
2,181,572	+				-0.4
2,181,573	-				-0.3
2,181,610	+				+0.6
2,181,645	+				+0.2
2,181,646	-				+0.5
2,181,655	+				+0.4
2,181,656	-				-0.5
2,181,668	-				+0.2
2,181,678	+				-0.1
2,181,719	+				-1.1
2,181,729	-				+0.2
2,181,885	-		PP_1935	0.51	-1.4
2,181,911	+		PP_1935	0.60	-0.5
2,181,949	-		PP_1935	0.72	-2.6
2,182,069	-				-0.9
2,182,132	-				-2.6
2,182,186	-				+0.1
2,182,194	+				+0.0
2,182,195	-				-0.0
2,182,359	+		PP_5487	0.43	-2.1
2,182,408	+		PP_5487	0.55	-0.1
2,182,413	-		PP_5487	0.57	+1.3
2,182,446	+		PP_5487	0.65	+0.8
2,182,580	+				+0.2
2,182,698	+		PP_5488	0.15	+1.9
2,182,743	+		PP_5488	0.22	-0.5
2,182,743	+		PP_5488	0.22	-0.2
2,182,909	-		PP_5488	0.47	-0.6
2,182,938	+		PP_5488	0.52	-2.4
2,182,938	+		PP_5488	0.52	+1.1
2,182,940	+		PP_5488	0.52	-0.3