Strain Fitness in Pseudomonas putida KT2440 around PP_1897

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
2,139,342	+		PP_1896	0.66	-1.8
2,139,382	+		PP_1896	0.71	-0.5
2,139,382	+		PP_1896	0.71	-1.0
2,139,400	+		PP_1896	0.73	-1.7
2,139,491	+				-0.2
2,139,491	+				-0.6
2,139,491	+				-0.9
2,139,492	-				-1.9
2,139,504	+				-2.4
2,139,504	+				+0.9
2,139,556	+				-0.5
2,139,557	-				+3.9
2,139,557	-				-3.9
2,139,557	-				+0.5
2,139,662	+		PP_5481	0.27	-1.3
2,139,662	+		PP_5481	0.27	+0.5
2,139,663	-		PP_5481	0.27	+0.5
2,139,680	+		PP_5481	0.30	+0.8
2,139,680	+		PP_5481	0.30	-0.7
2,139,681	-		PP_5481	0.30	-0.4
2,139,681	-		PP_5481	0.30	+0.3
2,139,830	+		PP_5481	0.54	-0.6
2,139,830	+		PP_5481	0.54	-0.5
2,139,830	+		PP_5481	0.54	+0.3
2,139,830	+		PP_5481	0.54	-0.6
2,139,831	-		PP_5481	0.54	-1.4
2,139,831	-				-0.7
2,139,831	-		PP_5481	0.54	+1.7
2,139,960	+		PP_5481	0.74	-0.5
2,139,961	-		PP_5481	0.74	+0.4
2,140,097	+				+0.2
2,140,097	+				-0.2
2,140,098	-				+1.3
2,140,098	-				-0.3
2,140,098	-				+1.4
2,140,124	+				+0.0
2,140,125	-				-0.6
2,140,125	-				-0.1
2,140,125	-				-0.4
2,140,152	+				-1.0
2,140,153	-				+1.1
2,140,153	-				-0.4
2,140,160	+				-1.5
2,140,160	+				+0.5
2,140,160	+				-0.4
2,140,161	-				-0.3
2,140,225	+				-0.2
2,140,259	+				+0.1
2,140,259	+				+0.2
2,140,260	-				+0.9
2,140,347	+				+0.8
2,140,347	+				-2.1
2,140,348	-				-0.3
2,140,744	+		PP_1897	0.22	-1.9
2,141,011	-		PP_1897	0.34	-1.8
2,141,205	+		PP_1897	0.42	-2.5
2,141,279	+		PP_1897	0.46	-0.0
2,141,279	+		PP_1897	0.46	+0.5
2,141,279	+		PP_1897	0.46	+0.6
2,141,279	+		PP_1897	0.46	+0.5
2,141,280	-		PP_1897	0.46	+0.3
2,141,280	-		PP_1897	0.46	-1.0
2,141,622	+		PP_1897	0.61	-2.1
2,141,622	+		PP_1897	0.61	-0.7
2,141,622	+		PP_1897	0.61	-2.4
2,141,622	+		PP_1897	0.61	+0.7
2,141,623	-		PP_1897	0.61	-2.0
2,141,623	-		PP_1897	0.61	-0.3
2,141,623	-		PP_1897	0.61	+1.4
2,141,623	-		PP_1897	0.61	-0.2
2,141,623	-		PP_1897	0.61	-1.0
2,141,685	+		PP_1897	0.64	-0.4
2,141,786	-		PP_1897	0.69	-0.9
2,141,807	+		PP_1897	0.70	-2.3
2,141,807	+		PP_1897	0.70	-2.2
2,141,808	-		PP_1897	0.70	-3.3
2,141,808	-		PP_1897	0.70	-2.5
2,141,808	-		PP_1897	0.70	+0.7
2,142,092	-		PP_1897	0.83	-3.7
2,142,092	-		PP_1897	0.83	+1.0
2,142,092	-		PP_1897	0.83	-0.9
2,142,092	-		PP_1897	0.83	-1.0
2,142,155	-		PP_1897	0.85	+0.4
2,142,288	+				+0.3
2,142,350	+				-1.6
2,142,427	-				+0.6
2,142,427	-				+0.9
2,142,549	+				-0.5
2,142,554	+				+0.0
2,142,554	+				+0.4
2,142,585	+				-1.0
2,142,660	+		PP_1898	0.16	-2.6
2,142,728	+		PP_1898	0.26	+0.6
2,142,728	+		PP_1898	0.26	-3.1
2,142,904	+		PP_1898	0.52	-1.0
2,143,041	+		PP_1898	0.73	-2.6
2,143,086	+		PP_1898	0.79	-2.1
2,143,316	+		PP_1899	0.22	-0.4