Strain Fitness in Pseudomonas putida KT2440 around PP_1824

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
2,048,952	+		PP_1822	0.14	+1.6
2,048,952	+		PP_1822	0.14	-1.4
2,048,952	+		PP_1822	0.14	+1.1
2,048,952	+		PP_1822	0.14	+0.0
2,048,952	+		PP_1822	0.14	-3.1
2,048,952	+		PP_1822	0.14	-0.4
2,048,953	-		PP_1822	0.14	-1.3
2,048,953	-		PP_1822	0.14	+0.3
2,048,953	-		PP_1822	0.14	+0.2
2,048,953	-		PP_1822	0.14	+0.9
2,049,990	+				+0.0
2,049,990	+				-0.6
2,049,990	+				-1.8
2,050,316	+		PP_1824	0.66	+0.3
2,050,316	+		PP_1824	0.66	-1.5
2,050,461	-				+1.8
2,050,521	-				-0.9
2,050,593	+				+0.4
2,050,717	+		PP_1825	0.11	-0.2
2,050,718	-		PP_1825	0.11	-0.6
2,050,851	+		PP_1825	0.53	-2.5
2,050,852	-		PP_1825	0.53	-0.5
2,050,893	-		PP_1825	0.66	-1.5
2,050,948	+		PP_1825	0.83	+1.2
2,050,993	+				+0.3
2,050,994	-				+1.3
2,050,994	-				-1.0
2,050,994	-				+0.1
2,050,994	-				+0.1
2,051,243	-		PP_1826	0.26	-1.5
2,051,501	+		PP_1826	0.70	+0.9