Strain Fitness in Pseudomonas putida KT2440 around PP_1679

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
1,872,696	+		PP_1677	0.67	-0.7
1,872,793	+		PP_1677	0.74	+0.7
1,872,794	-		PP_1677	0.74	-0.7
1,872,875	-		PP_1677	0.80	-0.5
1,872,988	+		PP_1677	0.87	-1.4
1,872,988	+		PP_1677	0.87	+0.8
1,872,988	+		PP_1677	0.87	+0.8
1,872,989	-		PP_1677	0.87	-1.6
1,873,073	-				-0.9
1,873,073	-				-1.3
1,873,178	-				-4.0
1,873,259	+		PP_1678	0.17	-3.5
1,873,259	+		PP_1678	0.17	-0.7
1,873,586	+		PP_1678	0.79	-1.4
1,873,586	+		PP_1678	0.79	-0.3
1,873,586	+		PP_1678	0.79	-0.4
1,873,587	-		PP_1678	0.80	-0.9
1,873,668	+				-1.2
1,873,668	+				-0.3
1,873,669	-				-0.3
1,873,669	-				-1.9
1,873,689	+				+0.8
1,873,689	+				+0.9
1,873,689	+				+0.8
1,873,689	+				-1.9
1,873,689	+				+1.1
1,873,689	+				-0.5
1,873,690	-				-1.3
1,873,690	-				-0.3
1,874,437	+		PP_1679	0.71	-0.6
1,874,484	+		PP_1679	0.75	-1.4
1,874,485	-		PP_1679	0.75	-1.3
1,874,485	-		PP_1679	0.75	-0.2
1,875,193	+		PP_1680	0.80	-1.5
1,875,406	+		PP_1681	0.17	+0.1
1,875,406	+		PP_1681	0.17	+1.2
1,875,407	-		PP_1681	0.17	-0.3
1,875,407	-		PP_1681	0.17	+1.5
1,875,407	-		PP_1681	0.17	-0.6
1,875,464	+		PP_1681	0.25	+0.1
1,875,464	+		PP_1681	0.25	-3.8
1,875,472	-		PP_1681	0.26	-1.3
1,875,515	+		PP_1681	0.31	-1.6
1,875,516	-		PP_1681	0.32	+0.3
1,875,572	+		PP_1681	0.39	+1.1
1,875,572	+		PP_1681	0.39	+0.8