Strain Fitness in Pseudomonas putida KT2440 around PP_1202

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
1,376,687	-		PP_1201	0.27	-4.3
1,376,719	+		PP_1201	0.29	-3.6
1,376,821	+		PP_1201	0.37	-1.1
1,376,824	+		PP_1201	0.37	-2.4
1,376,825	-		PP_1201	0.38	-0.5
1,376,825	-		PP_1201	0.38	-0.4
1,376,931	-		PP_1201	0.46	-1.0
1,377,053	-		PP_1201	0.55	+1.0
1,377,610	+				+0.3
1,377,726	+				-1.2
1,377,786	+				-0.0
1,377,873	-				-0.9
1,377,898	-		PP_1202	0.10	-0.8
1,377,912	+		PP_1202	0.11	-2.1
1,377,913	-		PP_1202	0.11	-1.0
1,378,064	+		PP_1202	0.16	-0.6
1,378,064	+		PP_1202	0.16	-0.3
1,378,084	-		PP_1202	0.17	-3.6
1,378,240	-		PP_1202	0.23	+0.6
1,378,345	-		PP_1202	0.27	+0.2
1,378,374	+		PP_1202	0.28	-0.9
1,378,375	-		PP_1202	0.28	+1.9
1,378,464	+		PP_1202	0.31	-0.9
1,378,464	+		PP_1202	0.31	-0.1
1,378,464	+		PP_1202	0.31	-2.4
1,378,465	-		PP_1202	0.32	-1.5
1,378,465	-				+1.5
1,378,465	-		PP_1202	0.32	+0.2
1,378,465	-		PP_1202	0.32	-1.8
1,378,497	+		PP_1202	0.33	-0.9
1,378,498	-		PP_1202	0.33	-0.5
1,378,498	-		PP_1202	0.33	-1.1
1,378,648	+		PP_1202	0.38	-0.9
1,378,648	+		PP_1202	0.38	-0.5
1,378,649	-		PP_1202	0.38	-3.9
1,378,764	+		PP_1202	0.43	-2.5
1,378,764	+		PP_1202	0.43	-0.5
1,378,765	-		PP_1202	0.43	-0.6
1,378,816	+		PP_1202	0.45	-0.4
1,378,817	-		PP_1202	0.45	-0.2
1,378,817	-		PP_1202	0.45	-1.5
1,378,878	+		PP_1202	0.47	-0.6
1,378,878	+		PP_1202	0.47	-1.1
1,378,879	-		PP_1202	0.47	-1.4
1,379,001	-		PP_1202	0.52	-1.5
1,379,119	+		PP_1202	0.56	-1.2
1,379,120	-		PP_1202	0.56	-0.2
1,379,134	+		PP_1202	0.57	-1.8
1,379,134	+		PP_1202	0.57	-1.7
1,379,134	+		PP_1202	0.57	-0.8
1,379,135	-		PP_1202	0.57	-0.2
1,379,139	-		PP_1202	0.57	-2.0
1,379,306	+		PP_1202	0.63	-1.8
1,379,306	+		PP_1202	0.63	-1.1
1,379,313	+		PP_1202	0.64	-2.0
1,379,313	+		PP_1202	0.64	+0.1
1,379,314	-		PP_1202	0.64	-3.7
1,379,314	-		PP_1202	0.64	-3.7
1,379,314	-		PP_1202	0.64	+0.1
1,379,314	-		PP_1202	0.64	-1.1
1,379,314	-		PP_1202	0.64	-0.8
1,379,326	-		PP_1202	0.64	-0.9
1,379,417	+		PP_1202	0.68	-0.3
1,379,454	+		PP_1202	0.69	-0.5
1,379,454	+		PP_1202	0.69	-0.4
1,379,455	-		PP_1202	0.69	-0.3
1,379,455	-		PP_1202	0.69	+0.7
1,379,503	-		PP_1202	0.71	-1.0
1,379,503	-		PP_1202	0.71	-1.5
1,379,614	+		PP_1202	0.75	+0.2
1,379,614	+		PP_1202	0.75	-0.8
1,379,649	+		PP_1202	0.76	-2.5
1,379,650	-		PP_1202	0.76	+0.4
1,379,660	+		PP_1202	0.77	-0.3
1,379,661	-		PP_1202	0.77	+0.2
1,379,666	+		PP_1202	0.77	-0.2
1,379,860	-		PP_1202	0.84	-1.3
1,379,976	+		PP_1202	0.89	-0.2
1,379,977	-		PP_1202	0.89	-1.9
1,379,997	+		PP_1202	0.89	-2.1
1,379,997	+		PP_1202	0.89	+0.8
1,379,997	+		PP_1202	0.89	-3.7
1,380,090	+				-2.0
1,380,090	+				-0.6
1,380,090	+				+0.3
1,380,090	+				-0.9
1,380,090	+				-1.3
1,380,091	-				+0.5
1,380,091	-				-0.6
1,380,091	-				-1.6
1,380,091	-				-3.0
1,380,091	-				-0.5
1,380,091	-				-1.8
1,380,091	-				+0.2
1,380,146	+				+0.1
1,380,146	+				-1.2
1,380,227	+				-0.9
1,380,345	-				+0.0
1,380,393	-				+1.0
1,380,398	+				+0.4
1,380,479	+				+0.1
1,380,479	+				+0.4
1,380,479	+				+1.3
1,380,480	-				+0.0
1,380,480	-				-0.5
1,380,480	-				-0.2
1,380,480	-				-0.1
1,380,481	+				-2.5
1,380,481	+				-1.3
1,380,481	+				+0.1
1,380,482	-				+0.0
1,380,482	-				+0.9
1,380,507	+				+0.4
1,380,535	-				-0.7
1,380,535	-				-0.3
1,380,535	-				-0.2
1,380,535	-				+0.5
1,380,591	+		PP_t67	0.71	+0.2
1,380,646	-				+0.9
1,380,658	-				+0.9
1,380,694	-				-1.0
1,380,694	-				+1.0
1,380,724	+				-1.0
1,380,849	+				-0.8
1,380,849	+				-0.0
1,380,849	+				+0.8
1,380,854	+				+0.2
1,380,856	+				+0.8
1,380,856	+				-0.5
1,381,172	+				+0.6
1,381,172	+				+0.4
1,381,173	-				-1.1
1,381,216	+				+1.2
1,381,216	+				-0.2