Strain Fitness in Pseudomonas putida KT2440 around PP_1041

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
1,189,218	+		PP_1039	0.22	-0.3
1,189,219	-				+0.5
1,189,219	-		PP_1039	0.22	-0.1
1,189,219	-		PP_1039	0.22	+0.9
1,189,219	-		PP_1039	0.22	+0.2
1,189,219	-		PP_1039	0.22	+0.5
1,189,219	-		PP_1039	0.22	-0.8
1,189,330	+		PP_1039	0.36	+1.0
1,189,342	-		PP_1039	0.38	-0.8
1,189,342	-		PP_1039	0.38	-2.5
1,189,446	+		PP_1039	0.52	-1.3
1,189,447	-		PP_1039	0.52	+0.5
1,189,447	-		PP_1039	0.52	+1.0
1,189,447	-		PP_1039	0.52	-0.1
1,189,447	-		PP_1039	0.52	+0.2
1,189,447	-		PP_1039	0.52	-1.1
1,189,667	+		PP_1039	0.81	+1.1
1,189,677	+		PP_1039	0.82	-1.9
1,189,677	+		PP_1039	0.82	+1.1
1,189,677	+		PP_1039	0.82	-0.1
1,189,678	-		PP_1039	0.82	+1.3
1,189,678	-		PP_1039	0.82	-3.0
1,189,678	-		PP_1039	0.82	-0.8
1,189,678	-		PP_1039	0.82	+0.5
1,190,271	-		PP_1041	0.73	-2.0
1,190,299	-		PP_1041	0.85	-1.2
1,190,349	-				-1.4
1,190,349	-				+1.1
1,190,349	-				-1.6
1,190,384	+				-2.0
1,190,421	-				-0.5
1,190,731	+		PP_1042	0.26	-0.8
1,190,842	+		PP_1042	0.38	+0.8
1,190,843	-		PP_1042	0.38	+0.3
1,190,847	-		PP_1042	0.38	+0.4
1,191,142	+		PP_1042	0.69	-1.3
1,191,142	+		PP_1042	0.69	-0.3
1,191,143	-		PP_1042	0.69	+0.0
1,191,143	-		PP_1042	0.69	+0.0
1,191,143	-		PP_1042	0.69	+0.3