Strain Fitness in Pseudomonas putida KT2440 around PP_1010

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
1,150,435	-		PP_1009	0.42	-1.1
1,150,464	+		PP_1009	0.45	-0.7
1,150,464	+		PP_1009	0.45	+0.9
1,150,465	-		PP_1009	0.45	+0.8
1,150,465	-		PP_1009	0.45	+1.2
1,150,609	-				-0.1
1,150,610	+		PP_1009	0.60	+0.4
1,150,610	+		PP_1009	0.60	-0.5
1,150,611	-		PP_1009	0.60	+0.5
1,150,611	-		PP_1009	0.60	+0.2
1,150,611	-		PP_1009	0.60	-1.8
1,150,863	+		PP_1009	0.85	+0.6
1,150,864	-		PP_1009	0.85	-0.5
1,150,864	-		PP_1009	0.85	+0.5
1,150,864	-		PP_1009	0.85	+0.1
1,150,945	+				+0.6
1,150,946	-				+1.1
1,150,947	+				-3.1
1,150,947	+				+0.9
1,150,948	-				+0.6
1,151,017	+				-0.2
1,151,018	-				+0.1
1,151,018	-				-1.9
1,151,018	-				-1.5
1,151,196	+				+0.1
1,151,196	+				-1.5
1,151,252	+				-2.3
1,151,258	+				-1.9
1,153,123	-				+0.2
1,153,123	-				+0.2
1,153,178	+				-0.4
1,153,178	+				-0.7
1,153,179	-				+0.7
1,153,201	+		PP_1011	0.11	+1.2
1,153,202	-		PP_1011	0.11	+0.9
1,153,232	-		PP_1011	0.14	-0.2
1,153,752	+		PP_1011	0.68	-0.0
1,153,753	-		PP_1011	0.68	-1.6
1,153,839	+		PP_1011	0.77	+1.4
1,153,839	+		PP_1011	0.77	-0.4
1,153,839	+		PP_1011	0.77	+0.7
1,153,839	+		PP_1011	0.77	+0.1
1,153,839	+		PP_1011	0.77	-0.5
1,153,839	+		PP_1011	0.77	+0.3
1,153,840	-		PP_1011	0.77	+2.0
1,153,840	-		PP_1011	0.77	+1.3
1,153,873	+		PP_1011	0.81	+0.6
1,153,873	+		PP_1011	0.81	-0.0
1,153,873	+		PP_1011	0.81	+0.5
1,153,874	-		PP_1011	0.81	+0.4
1,153,874	-		PP_1011	0.81	+0.5
1,153,874	-		PP_1011	0.81	+0.8
1,153,874	-		PP_1011	0.81	+0.2
1,153,874	-		PP_1011	0.81	-0.4
1,153,875	+		PP_1011	0.81	-0.7
1,153,876	-		PP_1011	0.81	+0.5
1,153,876	-		PP_1011	0.81	-0.6
1,153,876	-		PP_1011	0.81	-4.5
1,153,956	+		PP_1011	0.89	+0.3
1,153,956	+		PP_1011	0.89	+0.8
1,153,956	+		PP_1011	0.89	+0.8
1,153,966	+				-0.5