Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0858 and PP_0859 overlap by 13 nucleotides PP_0859 and PP_0860 are separated by 124 nucleotides PP_0860 and PP_0861 are separated by 231 nucleotides
PP_0858: PP_0858 - putative methionine/glutamine aminotransferase, at 992,994 to 994,142
_0858
PP_0859: PP_0859 - putative ketoglutaramate omega-amidase, at 994,130 to 994,921
_0859
PP_0860: PP_0860 - putative Sulfite reductase, flavoprotein component, at 995,046 to 997,595
_0860
PP_0861: PP_0861 - outer membrane ferric siderophore receptor, at 997,827 to 1,000,118
_0861
Position (kb) 995
996
997
998 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 994.076 kb on - strand at 994.129 kb on + strand at 994.145 kb on - strand at 994.145 kb on - strand at 994.211 kb on + strand, within PP_0859 at 994.211 kb on + strand, within PP_0859 at 994.280 kb on - strand, within PP_0859 at 994.338 kb on - strand, within PP_0859 at 994.466 kb on + strand, within PP_0859 at 994.467 kb on - strand, within PP_0859 at 994.467 kb on - strand, within PP_0859 at 994.511 kb on + strand, within PP_0859 at 994.511 kb on + strand, within PP_0859 at 994.578 kb on - strand, within PP_0859 at 994.578 kb on - strand, within PP_0859 at 994.634 kb on + strand, within PP_0859 at 994.635 kb on - strand, within PP_0859 at 994.712 kb on + strand, within PP_0859 at 994.712 kb on + strand, within PP_0859 at 994.713 kb on - strand, within PP_0859 at 994.760 kb on + strand, within PP_0859 at 994.760 kb on + strand, within PP_0859 at 994.761 kb on - strand, within PP_0859 at 994.843 kb on - strand at 994.843 kb on - strand at 994.903 kb on + strand at 994.904 kb on - strand at 995.036 kb on + strand at 995.036 kb on + strand at 995.050 kb on + strand at 995.050 kb on + strand at 995.050 kb on + strand at 995.050 kb on + strand at 995.050 kb on + strand at 995.051 kb on - strand at 995.051 kb on - strand at 995.091 kb on + strand at 995.092 kb on - strand at 995.167 kb on + strand at 995.167 kb on + strand at 995.167 kb on + strand at 995.168 kb on - strand at 995.236 kb on + strand at 995.236 kb on + strand at 995.236 kb on + strand at 995.236 kb on + strand at 995.237 kb on - strand at 995.237 kb on - strand at 995.237 kb on - strand at 995.237 kb on - strand at 995.237 kb on - strand at 995.237 kb on - strand at 995.237 kb on - strand at 995.237 kb on - strand at 995.237 kb on - strand at 995.237 kb on - strand at 995.487 kb on - strand, within PP_0860 at 995.487 kb on - strand, within PP_0860 at 995.838 kb on + strand, within PP_0860 at 995.839 kb on - strand, within PP_0860 at 995.899 kb on + strand, within PP_0860 at 995.900 kb on - strand, within PP_0860 at 996.172 kb on + strand, within PP_0860 at 996.172 kb on + strand, within PP_0860 at 996.172 kb on + strand, within PP_0860 at 996.172 kb on + strand, within PP_0860 at 996.173 kb on - strand, within PP_0860 at 996.500 kb on - strand, within PP_0860 at 996.580 kb on + strand, within PP_0860 at 996.602 kb on - strand, within PP_0860 at 996.602 kb on - strand, within PP_0860 at 996.615 kb on + strand, within PP_0860 at 996.616 kb on - strand, within PP_0860 at 996.616 kb on - strand, within PP_0860 at 996.643 kb on + strand, within PP_0860 at 996.644 kb on - strand, within PP_0860 at 996.779 kb on - strand, within PP_0860 at 996.779 kb on - strand, within PP_0860 at 996.970 kb on + strand, within PP_0860 at 996.971 kb on - strand, within PP_0860 at 996.971 kb on - strand, within PP_0860 at 996.971 kb on - strand, within PP_0860 at 997.007 kb on - strand, within PP_0860 at 997.007 kb on - strand, within PP_0860 at 997.007 kb on - strand, within PP_0860 at 997.194 kb on - strand, within PP_0860 at 997.291 kb on + strand, within PP_0860 at 997.292 kb on - strand, within PP_0860 at 997.292 kb on - strand, within PP_0860 at 997.464 kb on + strand at 997.464 kb on + strand at 997.464 kb on + strand at 997.464 kb on + strand at 997.464 kb on + strand at 997.465 kb on - strand at 997.465 kb on - strand at 997.507 kb on + strand at 997.508 kb on - strand at 997.508 kb on - strand at 997.642 kb on + strand at 997.642 kb on + strand at 997.642 kb on + strand at 997.643 kb on - strand at 997.643 kb on - strand at 997.643 kb on - strand at 997.643 kb on - strand at 997.732 kb on + strand at 997.733 kb on - strand at 997.906 kb on + strand at 997.909 kb on + strand at 997.910 kb on - strand at 997.910 kb on - strand at 997.969 kb on + strand at 997.969 kb on + strand at 997.988 kb on - strand at 997.992 kb on + strand at 997.996 kb on + strand at 997.996 kb on + strand at 997.996 kb on + strand at 997.996 kb on + strand at 997.996 kb on + strand at 997.997 kb on - strand at 997.997 kb on - strand at 997.997 kb on - strand at 997.997 kb on - strand at 998.032 kb on + strand at 998.032 kb on + strand at 998.033 kb on - strand at 998.090 kb on - strand, within PP_0861 at 998.191 kb on + strand, within PP_0861 at 998.191 kb on + strand, within PP_0861 at 998.191 kb on + strand, within PP_0861 at 998.191 kb on + strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.192 kb on - strand, within PP_0861 at 998.197 kb on + strand, within PP_0861 at 998.197 kb on + strand, within PP_0861 at 998.197 kb on + strand, within PP_0861 at 998.198 kb on - strand, within PP_0861 at 998.284 kb on + strand, within PP_0861 at 998.284 kb on + strand, within PP_0861 at 998.284 kb on + strand, within PP_0861 at 998.284 kb on + strand, within PP_0861 at 998.288 kb on + strand, within PP_0861 at 998.289 kb on - strand, within PP_0861 at 998.289 kb on - strand, within PP_0861 at 998.289 kb on - strand, within PP_0861 at 998.393 kb on - strand, within PP_0861 at 998.477 kb on + strand, within PP_0861 at 998.478 kb on - strand, within PP_0861 at 998.521 kb on + strand, within PP_0861 at 998.521 kb on + strand, within PP_0861 at 998.521 kb on + strand, within PP_0861 at 998.522 kb on - strand, within PP_0861 at 998.522 kb on - strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.530 kb on + strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.531 kb on - strand, within PP_0861 at 998.531 kb on - strand, within PP_0861
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 994,076 - +0.7 994,129 + -0.7 994,145 - +1.0 994,145 - +0.1 994,211 + PP_0859 0.10 -0.3 994,211 + PP_0859 0.10 -0.5 994,280 - PP_0859 0.19 +0.2 994,338 - PP_0859 0.26 +0.4 994,466 + PP_0859 0.42 +0.1 994,467 - PP_0859 0.43 +0.2 994,467 - PP_0859 0.43 -0.4 994,511 + PP_0859 0.48 +0.6 994,511 + PP_0859 0.48 -0.4 994,578 - PP_0859 0.57 -0.7 994,578 - PP_0859 0.57 +1.2 994,634 + PP_0859 0.64 -0.5 994,635 - PP_0859 0.64 -0.3 994,712 + PP_0859 0.73 -0.4 994,712 + PP_0859 0.73 +0.7 994,713 - PP_0859 0.74 -0.0 994,760 + PP_0859 0.80 +0.1 994,760 + PP_0859 0.80 -0.1 994,761 - PP_0859 0.80 +1.1 994,843 - +0.2 994,843 - +0.5 994,903 + +0.7 994,904 - +0.8 995,036 + -1.8 995,036 + +1.8 995,050 + +0.1 995,050 + -0.4 995,050 + +0.8 995,050 + +0.2 995,050 + +0.3 995,051 - +0.5 995,051 - +1.5 995,091 + +0.8 995,092 - +0.5 995,167 + +0.3 995,167 + +0.3 995,167 + +0.7 995,168 - +0.7 995,236 + -0.3 995,236 + +1.0 995,236 + +0.6 995,236 + +1.1 995,237 - -2.7 995,237 - -0.1 995,237 - -0.3 995,237 - +0.5 995,237 - +0.9 995,237 - +0.6 995,237 - +1.0 995,237 - +1.0 995,237 - +0.4 995,237 - -0.1 995,487 - PP_0860 0.17 +0.9 995,487 - PP_0860 0.17 -0.4 995,838 + PP_0860 0.31 +1.2 995,839 - PP_0860 0.31 +0.8 995,899 + PP_0860 0.33 +0.6 995,900 - PP_0860 0.33 +1.2 996,172 + PP_0860 0.44 +0.6 996,172 + PP_0860 0.44 +0.9 996,172 + PP_0860 0.44 +0.1 996,172 + PP_0860 0.44 -0.2 996,173 - PP_0860 0.44 -1.1 996,500 - PP_0860 0.57 -0.3 996,580 + PP_0860 0.60 +1.0 996,602 - PP_0860 0.61 -1.7 996,602 - PP_0860 0.61 +0.3 996,615 + PP_0860 0.62 -0.7 996,616 - PP_0860 0.62 -0.0 996,616 - PP_0860 0.62 +0.7 996,643 + PP_0860 0.63 -0.3 996,644 - PP_0860 0.63 +0.7 996,779 - PP_0860 0.68 -0.6 996,779 - PP_0860 0.68 +0.1 996,970 + PP_0860 0.75 +1.1 996,971 - PP_0860 0.75 +1.5 996,971 - PP_0860 0.75 -0.0 996,971 - PP_0860 0.75 +0.5 997,007 - PP_0860 0.77 -0.1 997,007 - PP_0860 0.77 +0.6 997,007 - PP_0860 0.77 +2.6 997,194 - PP_0860 0.84 +0.2 997,291 + PP_0860 0.88 +0.9 997,292 - PP_0860 0.88 -0.4 997,292 - PP_0860 0.88 +1.1 997,464 + -0.4 997,464 + -3.1 997,464 + -1.0 997,464 + -0.3 997,464 + +0.3 997,465 - -0.4 997,465 - -0.7 997,507 + +0.3 997,508 - +0.5 997,508 - +0.3 997,642 + +0.8 997,642 + -1.3 997,642 + +1.1 997,643 - +1.6 997,643 - -4.1 997,643 - -0.1 997,643 - -0.5 997,732 + +0.7 997,733 - -0.6 997,906 + +0.3 997,909 + +1.1 997,910 - -0.5 997,910 - -1.1 997,969 + +0.3 997,969 + -0.1 997,988 - -0.4 997,992 + +0.9 997,996 + +0.9 997,996 + -0.3 997,996 + -0.5 997,996 + +0.2 997,996 + +0.2 997,997 - +1.7 997,997 - -2.9 997,997 - -1.5 997,997 - -0.3 998,032 + -2.4 998,032 + +0.4 998,033 - +1.3 998,090 - PP_0861 0.11 -0.4 998,191 + PP_0861 0.16 -0.6 998,191 + PP_0861 0.16 -0.8 998,191 + PP_0861 0.16 -2.9 998,191 + PP_0861 0.16 -1.1 998,192 - PP_0861 0.16 -0.3 998,192 - PP_0861 0.16 +0.1 998,192 - PP_0861 0.16 -0.0 998,192 - PP_0861 0.16 +0.0 998,192 - PP_0861 0.16 +0.4 998,192 - PP_0861 0.16 -1.5 998,192 - PP_0861 0.16 -1.1 998,197 + PP_0861 0.16 -1.8 998,197 + PP_0861 0.16 +0.9 998,197 + PP_0861 0.16 +0.8 998,198 - PP_0861 0.16 -0.3 998,284 + PP_0861 0.20 -1.6 998,284 + PP_0861 0.20 +0.2 998,284 + PP_0861 0.20 -1.2 998,284 + PP_0861 0.20 +1.0 998,288 + PP_0861 0.20 -0.7 998,289 - PP_0861 0.20 +0.0 998,289 - PP_0861 0.20 +0.5 998,289 - PP_0861 0.20 -1.0 998,393 - PP_0861 0.25 -0.1 998,477 + PP_0861 0.28 +2.0 998,478 - PP_0861 0.28 -0.7 998,521 + PP_0861 0.30 +0.4 998,521 + PP_0861 0.30 -0.0 998,521 + PP_0861 0.30 +1.2 998,522 - PP_0861 0.30 -0.4 998,522 - PP_0861 0.30 -0.3 998,530 + PP_0861 0.31 -0.3 998,530 + -0.9 998,530 + PP_0861 0.31 +0.8 998,530 + PP_0861 0.31 +0.9 998,530 + PP_0861 0.31 +0.6 998,530 + PP_0861 0.31 +1.0 998,530 + PP_0861 0.31 +0.4 998,531 - PP_0861 0.31 -0.7 998,531 - PP_0861 0.31 -0.1 998,531 - PP_0861 0.31 -0.8 998,531 - PP_0861 0.31 +0.7 998,531 - PP_0861 0.31 -0.5
Or see this region's nucleotide sequence