Strain Fitness in Pseudomonas putida KT2440 around PP_0777

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0774 and PP_0775 are separated by 31 nucleotidesPP_0775 and PP_0776 overlap by 2 nucleotidesPP_0776 and PP_0777 are separated by 145 nucleotidesPP_0777 and PP_0778 are separated by 63 nucleotides PP_0774: PP_0774 - Phosphate acetyltransferase, at 891,627 to 893,714 _0774 PP_0775: PP_0775 - conserved protein of unknown function, at 893,746 to 894,048 _0775 PP_0776: PP_0776 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 894,047 to 894,532 _0776 PP_0777: PP_0777 - Glutathione peroxidase, at 894,678 to 895,160 _0777 PP_0778: PP_0778 - Glycosyl transferase, group 1 family protein, at 895,224 to 896,414 _0778 Position (kb) 894 895 896Strain fitness (log2 ratio) -2 -1 0 1 2at 893.731 kb on - strandat 893.731 kb on - strandat 893.761 kb on - strandat 894.004 kb on + strand, within PP_0775at 894.004 kb on + strand, within PP_0775at 894.005 kb on - strand, within PP_0775at 894.019 kb on + strandat 894.083 kb on + strandat 894.083 kb on + strandat 894.084 kb on - strandat 894.084 kb on - strandat 894.084 kb on - strandat 894.085 kb on + strandat 894.086 kb on - strandat 894.166 kb on + strand, within PP_0776at 894.248 kb on + strand, within PP_0776at 894.257 kb on + strand, within PP_0776at 894.544 kb on - strandat 894.544 kb on - strandat 894.624 kb on + strandat 894.624 kb on + strandat 894.801 kb on + strand, within PP_0777at 894.823 kb on - strand, within PP_0777at 894.831 kb on + strand, within PP_0777at 894.832 kb on - strand, within PP_0777at 894.832 kb on - strand, within PP_0777at 894.832 kb on - strand, within PP_0777at 894.934 kb on - strand, within PP_0777at 894.934 kb on - strand, within PP_0777at 894.997 kb on - strand, within PP_0777at 894.997 kb on - strand, within PP_0777at 895.040 kb on + strand, within PP_0777at 895.040 kb on + strand, within PP_0777at 895.040 kb on + strand, within PP_0777at 895.041 kb on - strand, within PP_0777at 895.041 kb on - strand, within PP_0777at 895.263 kb on - strandat 895.295 kb on - strandat 895.467 kb on - strand, within PP_0778at 895.467 kb on - strand, within PP_0778at 895.492 kb on + strand, within PP_0778at 895.492 kb on + strand, within PP_0778at 895.493 kb on - strand, within PP_0778at 895.501 kb on - strand, within PP_0778at 895.588 kb on + strand, within PP_0778at 895.588 kb on + strand, within PP_0778at 895.589 kb on - strand, within PP_0778at 895.589 kb on - strand, within PP_0778at 895.711 kb on + strand, within PP_0778at 895.722 kb on + strand, within PP_0778at 895.981 kb on + strand, within PP_0778at 895.981 kb on + strand, within PP_0778at 895.981 kb on + strand, within PP_0778at 895.982 kb on - strand, within PP_0778at 895.982 kb on - strand, within PP_0778at 896.017 kb on + strand, within PP_0778at 896.018 kb on - strand, within PP_0778at 896.018 kb on - strand, within PP_0778at 896.029 kb on + strand, within PP_0778at 896.029 kb on + strand, within PP_0778at 896.128 kb on + strand, within PP_0778at 896.128 kb on + strand, within PP_0778at 896.128 kb on + strand, within PP_0778at 896.129 kb on - strand, within PP_0778at 896.129 kb on - strand, within PP_0778at 896.129 kb on - strand, within PP_0778at 896.129 kb on - strand, within PP_0778at 896.134 kb on - strand, within PP_0778at 896.134 kb on - strand, within PP_0778at 896.134 kb on - strand, within PP_0778at 896.134 kb on - strand, within PP_0778

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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893,731 - -1.2
893,731 - -0.1
893,761 - +0.7
894,004 + PP_0775 0.85 +0.4
894,004 + PP_0775 0.85 +1.6
894,005 - PP_0775 0.85 -2.1
894,019 + -0.6
894,083 + -0.5
894,083 + -2.3
894,084 - -1.3
894,084 - -0.4
894,084 - -0.9
894,085 + -1.9
894,086 - -1.1
894,166 + PP_0776 0.24 -1.5
894,248 + PP_0776 0.41 +2.0
894,257 + PP_0776 0.43 -2.2
894,544 - +2.5
894,544 - -0.3
894,624 + +1.3
894,624 + +0.7
894,801 + PP_0777 0.25 -0.2
894,823 - PP_0777 0.30 -1.0
894,831 + PP_0777 0.32 -1.6
894,832 - PP_0777 0.32 +0.8
894,832 - PP_0777 0.32 +0.7
894,832 - PP_0777 0.32 +0.2
894,934 - PP_0777 0.53 +1.1
894,934 - PP_0777 0.53 +2.2
894,997 - PP_0777 0.66 +0.6
894,997 - PP_0777 0.66 +0.6
895,040 + PP_0777 0.75 +0.3
895,040 + PP_0777 0.75 +0.8
895,040 + PP_0777 0.75 +0.7
895,041 - PP_0777 0.75 +1.3
895,041 - PP_0777 0.75 +0.3
895,263 - -0.1
895,295 - -2.0
895,467 - PP_0778 0.20 -1.0
895,467 - PP_0778 0.20 +0.6
895,492 + PP_0778 0.23 -1.9
895,492 + PP_0778 0.23 +1.3
895,493 - PP_0778 0.23 +0.4
895,501 - PP_0778 0.23 +0.8
895,588 + PP_0778 0.31 +1.0
895,588 + PP_0778 0.31 -0.2
895,589 - PP_0778 0.31 +1.0
895,589 - PP_0778 0.31 +0.2
895,711 + PP_0778 0.41 +2.3
895,722 + PP_0778 0.42 +1.5
895,981 + PP_0778 0.64 +0.5
895,981 + PP_0778 0.64 +0.0
895,981 + PP_0778 0.64 -0.1
895,982 - PP_0778 0.64 +0.5
895,982 - PP_0778 0.64 -0.6
896,017 + PP_0778 0.67 +0.6
896,018 - PP_0778 0.67 +0.7
896,018 - PP_0778 0.67 +0.2
896,029 + PP_0778 0.68 +0.5
896,029 + PP_0778 0.68 +0.3
896,128 + PP_0778 0.76 -0.1
896,128 + PP_0778 0.76 -1.9
896,128 + PP_0778 0.76 -0.9
896,129 - PP_0778 0.76 -0.0
896,129 - PP_0778 0.76 -0.6
896,129 - PP_0778 0.76 -0.8
896,129 - PP_0778 0.76 -1.3
896,134 - PP_0778 0.76 +0.4
896,134 - PP_0778 0.76 +1.0
896,134 - PP_0778 0.76 -0.5
896,134 - PP_0778 0.76 -1.9

Or see this region's nucleotide sequence