Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0769 and PP_0770 are separated by 193 nucleotides PP_0770 and PP_0771 overlap by 4 nucleotides PP_0771 and PP_0772 are separated by 18 nucleotides PP_0772 and PP_0773 are separated by 118 nucleotides PP_0773 and PP_0774 are separated by 79 nucleotides
PP_0769: PP_0769 - Sensor histidine kinase, at 888,571 to 889,263
_0769
PP_0770: PP_0770 - PemI-like protein, at 889,457 to 889,711
_0770
PP_0771: PP_0771 - mRNA interferase, at 889,708 to 890,055
_0771
PP_0772: PP_0772 - Metallo-beta-lactamase family protein, at 890,074 to 890,718
_0772
PP_0773: PP_0773 - OmpA/MotB domain-containing protein, at 890,837 to 891,547
_0773
PP_0774: PP_0774 - Phosphate acetyltransferase, at 891,627 to 893,714
_0774
Position (kb) 890
891 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 889.103 kb on - strand, within PP_0769 at 889.103 kb on - strand, within PP_0769 at 889.103 kb on - strand, within PP_0769 at 889.151 kb on - strand, within PP_0769 at 889.211 kb on + strand at 889.211 kb on + strand at 889.211 kb on + strand at 889.257 kb on - strand at 889.278 kb on + strand at 889.278 kb on + strand at 889.324 kb on + strand at 889.324 kb on + strand at 889.382 kb on + strand at 889.383 kb on - strand at 889.383 kb on - strand at 889.383 kb on - strand at 889.383 kb on - strand at 889.387 kb on - strand at 889.430 kb on - strand at 889.430 kb on - strand at 889.432 kb on + strand at 889.432 kb on + strand at 889.432 kb on + strand at 889.432 kb on + strand at 889.432 kb on + strand at 889.432 kb on + strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.440 kb on + strand at 889.441 kb on - strand at 889.452 kb on + strand at 889.453 kb on - strand at 889.453 kb on - strand at 889.453 kb on - strand at 889.515 kb on + strand, within PP_0770 at 889.610 kb on + strand, within PP_0770 at 889.611 kb on - strand, within PP_0770 at 889.611 kb on - strand, within PP_0770 at 889.805 kb on + strand, within PP_0771 at 889.806 kb on - strand, within PP_0771 at 889.810 kb on - strand, within PP_0771 at 889.844 kb on + strand, within PP_0771 at 889.845 kb on - strand, within PP_0771 at 889.845 kb on - strand, within PP_0771 at 889.991 kb on + strand, within PP_0771 at 889.992 kb on - strand, within PP_0771 at 889.992 kb on - strand, within PP_0771 at 890.067 kb on - strand at 890.079 kb on + strand at 890.079 kb on + strand at 890.079 kb on + strand at 890.079 kb on + strand at 890.080 kb on - strand at 890.080 kb on - strand at 890.392 kb on + strand, within PP_0772 at 890.392 kb on + strand, within PP_0772 at 890.393 kb on - strand, within PP_0772 at 890.393 kb on - strand, within PP_0772 at 890.393 kb on - strand, within PP_0772 at 890.469 kb on + strand, within PP_0772 at 890.469 kb on + strand, within PP_0772 at 890.470 kb on - strand, within PP_0772 at 890.470 kb on - strand, within PP_0772 at 890.777 kb on + strand at 890.777 kb on + strand at 890.777 kb on + strand at 890.777 kb on + strand at 890.777 kb on + strand at 890.777 kb on + strand at 890.777 kb on + strand at 890.777 kb on + strand at 890.778 kb on - strand at 890.778 kb on - strand at 890.778 kb on - strand at 890.778 kb on - strand at 890.778 kb on - strand at 890.816 kb on - strand at 890.903 kb on + strand at 890.904 kb on - strand at 890.957 kb on + strand, within PP_0773 at 891.080 kb on + strand, within PP_0773 at 891.224 kb on + strand, within PP_0773 at 891.365 kb on + strand, within PP_0773 at 891.365 kb on + strand, within PP_0773 at 891.366 kb on - strand, within PP_0773 at 891.366 kb on - strand, within PP_0773 at 891.366 kb on - strand, within PP_0773 at 891.366 kb on - strand, within PP_0773 at 891.405 kb on + strand, within PP_0773 at 891.406 kb on - strand, within PP_0773 at 891.512 kb on + strand at 891.512 kb on + strand at 891.512 kb on + strand at 891.513 kb on - strand at 891.513 kb on - strand at 891.540 kb on - strand at 891.555 kb on + strand at 891.556 kb on - strand at 891.556 kb on - strand at 891.663 kb on + strand at 891.664 kb on - strand at 891.668 kb on + strand at 891.668 kb on + strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.669 kb on - strand at 891.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 889,103 - PP_0769 0.77 -1.4 889,103 - PP_0769 0.77 +0.7 889,103 - PP_0769 0.77 -0.2 889,151 - PP_0769 0.84 -1.4 889,211 + +0.4 889,211 + +1.5 889,211 + -0.8 889,257 - -0.2 889,278 + -1.1 889,278 + -0.1 889,324 + +0.3 889,324 + -2.5 889,382 + +0.3 889,383 - -0.8 889,383 - +1.5 889,383 - -1.0 889,383 - +2.2 889,387 - -0.4 889,430 - -1.0 889,430 - +0.6 889,432 + +0.5 889,432 + -0.3 889,432 + +0.7 889,432 + -0.3 889,432 + -0.2 889,432 + -0.1 889,433 - -0.3 889,433 - -0.2 889,433 - -1.4 889,433 - +0.1 889,433 - -0.1 889,433 - +0.1 889,433 - -1.4 889,433 - -1.2 889,433 - -0.4 889,436 + -0.3 889,436 + +0.4 889,436 + +0.9 889,436 + +0.1 889,436 + +0.8 889,436 + +0.6 889,436 + -1.0 889,437 - +0.9 889,437 - +0.3 889,437 - +0.2 889,437 - -0.5 889,437 - +0.8 889,437 - +0.8 889,437 - +0.8 889,437 - -0.1 889,437 - +1.3 889,437 - +0.5 889,440 + -0.8 889,441 - +1.2 889,452 + +0.0 889,453 - -0.2 889,453 - -1.7 889,453 - +0.3 889,515 + PP_0770 0.23 -0.4 889,610 + PP_0770 0.60 +0.1 889,611 - PP_0770 0.60 -0.7 889,611 - PP_0770 0.60 +0.2 889,805 + PP_0771 0.28 -0.1 889,806 - PP_0771 0.28 -0.1 889,810 - PP_0771 0.29 +0.2 889,844 + PP_0771 0.39 -0.0 889,845 - PP_0771 0.39 -3.8 889,845 - PP_0771 0.39 +0.3 889,991 + PP_0771 0.81 -0.1 889,992 - PP_0771 0.82 -0.4 889,992 - PP_0771 0.82 -1.1 890,067 - -0.3 890,079 + -0.1 890,079 + +0.4 890,079 + -0.4 890,079 + -1.3 890,080 - -0.5 890,080 - +0.0 890,392 + PP_0772 0.49 -2.2 890,392 + PP_0772 0.49 +0.2 890,393 - PP_0772 0.49 +0.1 890,393 - PP_0772 0.49 -0.8 890,393 - PP_0772 0.49 +0.0 890,469 + PP_0772 0.61 -2.4 890,469 + PP_0772 0.61 -1.6 890,470 - PP_0772 0.61 -1.4 890,470 - PP_0772 0.61 -0.5 890,777 + -0.7 890,777 + -0.2 890,777 + -0.5 890,777 + -1.4 890,777 + -0.6 890,777 + +0.3 890,777 + +1.6 890,777 + -0.4 890,778 - +0.2 890,778 - -0.0 890,778 - -0.9 890,778 - +1.3 890,778 - +0.5 890,816 - -2.1 890,903 + +0.5 890,904 - -0.1 890,957 + PP_0773 0.17 -0.2 891,080 + PP_0773 0.34 -1.6 891,224 + PP_0773 0.54 +0.1 891,365 + PP_0773 0.74 +1.0 891,365 + PP_0773 0.74 -0.2 891,366 - PP_0773 0.74 +0.8 891,366 - PP_0773 0.74 +1.1 891,366 - PP_0773 0.74 +0.4 891,366 - PP_0773 0.74 -0.3 891,405 + PP_0773 0.80 +0.3 891,406 - PP_0773 0.80 +0.1 891,512 + -0.5 891,512 + +0.1 891,512 + +1.5 891,513 - -1.7 891,513 - +0.2 891,540 - +1.0 891,555 + +0.2 891,556 - -0.2 891,556 - -1.1 891,663 + -0.1 891,664 - +1.7 891,668 + -1.1 891,668 + +0.3 891,669 - -3.1 891,669 - -0.3 891,669 - +0.6 891,669 - -1.2 891,669 - -0.1 891,669 - +1.3 891,669 - -0.8 891,669 - +1.2
Or see this region's nucleotide sequence