Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0702 and PP_0703 are separated by 7 nucleotides PP_0703 and PP_0704 overlap by 8 nucleotides PP_0704 and PP_0705 are separated by 171 nucleotides PP_0705 and PP_0706 are separated by 47 nucleotides
PP_0702: PP_0702 - Major facilitator family transporter, at 816,052 to 817,209
_0702
PP_0703: PP_0703 - putative Transmembrane sensor, at 817,217 to 818,167
_0703
PP_0704: PP_0704 - RNA polymerase sigma-70 factor, ECF subfamily, at 818,160 to 818,675
_0704
PP_0705: PP_0705 - DNA-3-methyladenine glycosylase, at 818,847 to 819,473
_0705
PP_0706: PP_0706 - fused O(6)-alkylguanine DNA alkyltransferase - transcriptional activator, at 819,521 to 820,573
_0706
Position (kb) 818
819 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 817.210 kb on + strand at 817.218 kb on + strand at 817.219 kb on - strand at 817.219 kb on - strand at 817.242 kb on + strand at 817.242 kb on + strand at 817.243 kb on - strand at 817.243 kb on - strand at 817.255 kb on - strand at 817.320 kb on + strand, within PP_0703 at 817.434 kb on - strand, within PP_0703 at 817.740 kb on + strand, within PP_0703 at 817.740 kb on + strand, within PP_0703 at 817.740 kb on + strand, within PP_0703 at 818.011 kb on + strand, within PP_0703 at 818.156 kb on - strand at 818.173 kb on + strand at 818.174 kb on - strand at 818.351 kb on + strand, within PP_0704 at 818.369 kb on + strand, within PP_0704 at 818.369 kb on + strand, within PP_0704 at 818.370 kb on - strand, within PP_0704 at 818.370 kb on - strand, within PP_0704 at 818.370 kb on - strand, within PP_0704 at 818.488 kb on + strand, within PP_0704 at 818.488 kb on + strand, within PP_0704 at 818.489 kb on - strand, within PP_0704 at 818.546 kb on + strand, within PP_0704 at 818.615 kb on + strand, within PP_0704 at 818.616 kb on - strand, within PP_0704 at 818.616 kb on - strand, within PP_0704 at 818.630 kb on - strand at 818.678 kb on + strand at 818.679 kb on - strand at 818.742 kb on + strand at 818.743 kb on - strand at 818.743 kb on - strand at 818.770 kb on + strand at 818.770 kb on + strand at 818.771 kb on - strand at 818.812 kb on + strand at 818.878 kb on - strand at 818.930 kb on + strand, within PP_0705 at 818.964 kb on - strand, within PP_0705 at 818.982 kb on + strand, within PP_0705 at 818.982 kb on + strand, within PP_0705 at 818.982 kb on + strand, within PP_0705 at 818.983 kb on - strand, within PP_0705 at 818.983 kb on - strand, within PP_0705 at 818.983 kb on - strand, within PP_0705 at 819.303 kb on + strand, within PP_0705 at 819.304 kb on - strand, within PP_0705 at 819.304 kb on - strand, within PP_0705 at 819.304 kb on - strand, within PP_0705 at 819.456 kb on + strand at 819.457 kb on - strand at 819.457 kb on - strand at 819.491 kb on + strand at 819.491 kb on + strand at 819.506 kb on - strand at 819.530 kb on + strand at 819.530 kb on + strand at 819.606 kb on + strand at 819.606 kb on + strand at 819.606 kb on + strand at 819.607 kb on - strand at 819.610 kb on + strand at 819.610 kb on + strand at 819.610 kb on + strand at 819.611 kb on - strand at 819.611 kb on - strand at 819.661 kb on + strand, within PP_0706 at 819.662 kb on - strand, within PP_0706
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 817,210 + -0.5 817,218 + -0.7 817,219 - -0.4 817,219 - -3.1 817,242 + +0.0 817,242 + -0.6 817,243 - +1.4 817,243 - +0.7 817,255 - +0.8 817,320 + PP_0703 0.11 +0.2 817,434 - PP_0703 0.23 +1.3 817,740 + PP_0703 0.55 -0.3 817,740 + PP_0703 0.55 +0.4 817,740 + PP_0703 0.55 +1.6 818,011 + PP_0703 0.83 -1.5 818,156 - +0.6 818,173 + +0.4 818,174 - -0.6 818,351 + PP_0704 0.37 +0.3 818,369 + PP_0704 0.41 -2.8 818,369 + PP_0704 0.41 -0.2 818,370 - PP_0704 0.41 -3.1 818,370 - PP_0704 0.41 -0.3 818,370 - PP_0704 0.41 -0.3 818,488 + PP_0704 0.64 -5.1 818,488 + PP_0704 0.64 -4.5 818,489 - PP_0704 0.64 +0.4 818,546 + PP_0704 0.75 -1.8 818,615 + PP_0704 0.88 -1.6 818,616 - PP_0704 0.88 -5.1 818,616 - PP_0704 0.88 -0.6 818,630 - -1.4 818,678 + -1.6 818,679 - -1.4 818,742 + -1.7 818,743 - +0.4 818,743 - +1.0 818,770 + -0.6 818,770 + -5.1 818,771 - +1.0 818,812 + -1.0 818,878 - -1.0 818,930 + PP_0705 0.13 -3.4 818,964 - PP_0705 0.19 +0.9 818,982 + PP_0705 0.22 -2.1 818,982 + PP_0705 0.22 -0.4 818,982 + PP_0705 0.22 -1.1 818,983 - PP_0705 0.22 +2.2 818,983 - PP_0705 0.22 +0.3 818,983 - PP_0705 0.22 +1.0 819,303 + PP_0705 0.73 -2.9 819,304 - PP_0705 0.73 -1.1 819,304 - PP_0705 0.73 +0.6 819,304 - PP_0705 0.73 +0.3 819,456 + -0.3 819,457 - -0.7 819,457 - -0.5 819,491 + +0.3 819,491 + -0.4 819,506 - +0.2 819,530 + -1.4 819,530 + +0.6 819,606 + +0.7 819,606 + -2.6 819,606 + -0.3 819,607 - +1.1 819,610 + -0.1 819,610 + -0.5 819,610 + +0.8 819,611 - +1.2 819,611 - -0.8 819,661 + PP_0706 0.13 +1.1 819,662 - PP_0706 0.13 -0.1
Or see this region's nucleotide sequence