Strain Fitness in Pseudomonas putida KT2440 around PP_0119

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0117 and PP_0118 overlap by 8 nucleotidesPP_0118 and PP_0119 overlap by 4 nucleotidesPP_0119 and PP_0120 are separated by 66 nucleotides PP_0117: PP_0117 - Zn(2+) ABC transporter - permease subunit, at 123,085 to 123,867 _0117 PP_0118: PP_0118 - zinc import ATP-binding protein, at 123,860 to 124,633 _0118 PP_0119: PP_0119 - putative zinc uptake regulation protein ZUR, at 124,630 to 125,115 _0119 PP_0120: PP_0120 - putative zinc ABC transporter, at 125,182 to 126,090 _0120 Position (kb) 124 125 126Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 123.788 kb on - strand, within PP_0117at 123.788 kb on - strand, within PP_0117at 123.951 kb on + strand, within PP_0118at 123.951 kb on + strand, within PP_0118at 123.951 kb on + strand, within PP_0118at 123.951 kb on + strand, within PP_0118at 123.952 kb on - strand, within PP_0118at 123.952 kb on - strand, within PP_0118at 123.952 kb on - strand, within PP_0118at 123.952 kb on - strand, within PP_0118at 123.952 kb on - strand, within PP_0118at 124.152 kb on + strand, within PP_0118at 124.152 kb on + strand, within PP_0118at 124.153 kb on - strand, within PP_0118at 124.153 kb on - strand, within PP_0118at 124.153 kb on - strand, within PP_0118at 124.187 kb on + strand, within PP_0118at 124.187 kb on + strand, within PP_0118at 124.188 kb on - strand, within PP_0118at 124.271 kb on - strand, within PP_0118at 124.271 kb on - strand, within PP_0118at 124.343 kb on + strand, within PP_0118at 124.344 kb on - strand, within PP_0118at 124.419 kb on + strand, within PP_0118at 124.419 kb on + strand, within PP_0118at 124.419 kb on + strand, within PP_0118at 124.420 kb on - strand, within PP_0118at 124.448 kb on + strand, within PP_0118at 124.482 kb on - strand, within PP_0118at 124.482 kb on - strand, within PP_0118at 124.650 kb on + strandat 124.651 kb on - strandat 124.853 kb on - strand, within PP_0119at 124.889 kb on + strand, within PP_0119at 124.889 kb on + strand, within PP_0119at 125.065 kb on + strand, within PP_0119at 125.065 kb on + strand, within PP_0119at 125.065 kb on + strand, within PP_0119at 125.066 kb on - strand, within PP_0119at 125.066 kb on - strand, within PP_0119at 125.144 kb on + strandat 125.145 kb on - strandat 125.145 kb on - strandat 125.145 kb on - strandat 125.145 kb on - strandat 125.145 kb on - strandat 125.147 kb on + strandat 125.147 kb on + strandat 125.147 kb on + strandat 125.147 kb on + strandat 125.148 kb on - strandat 125.153 kb on - strandat 125.174 kb on + strandat 125.256 kb on + strandat 125.256 kb on + strandat 125.347 kb on + strand, within PP_0120at 125.398 kb on + strand, within PP_0120at 125.452 kb on - strand, within PP_0120at 125.452 kb on - strand, within PP_0120at 125.452 kb on - strand, within PP_0120at 125.572 kb on - strand, within PP_0120at 125.572 kb on - strand, within PP_0120at 125.727 kb on + strand, within PP_0120at 125.727 kb on + strand, within PP_0120at 125.728 kb on - strand, within PP_0120at 125.728 kb on - strand, within PP_0120at 125.807 kb on - strand, within PP_0120at 126.031 kb on + strandat 126.032 kb on - strandat 126.088 kb on + strandat 126.088 kb on + strandat 126.088 kb on + strandat 126.088 kb on + strandat 126.089 kb on - strandat 126.089 kb on - strandat 126.089 kb on - strandat 126.089 kb on - strandat 126.089 kb on - strandat 126.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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123,788 - PP_0117 0.90 +0.7
123,788 - PP_0117 0.90 +0.1
123,951 + PP_0118 0.12 +0.4
123,951 + PP_0118 0.12 -0.1
123,951 + PP_0118 0.12 +0.9
123,951 + PP_0118 0.12 -2.0
123,952 - PP_0118 0.12 +1.4
123,952 - PP_0118 0.12 +1.4
123,952 - PP_0118 0.12 +0.2
123,952 - PP_0118 0.12 +1.0
123,952 - PP_0118 0.12 +0.6
124,152 + PP_0118 0.38 -0.3
124,152 + PP_0118 0.38 +2.0
124,153 - PP_0118 0.38 -0.5
124,153 - PP_0118 0.38 -3.9
124,153 - PP_0118 0.38 -1.9
124,187 + PP_0118 0.42 +0.4
124,187 + PP_0118 0.42 -1.6
124,188 - PP_0118 0.42 +2.0
124,271 - PP_0118 0.53 -0.7
124,271 - PP_0118 0.53 -2.6
124,343 + PP_0118 0.62 -1.0
124,344 - PP_0118 0.63 -4.0
124,419 + PP_0118 0.72 -1.4
124,419 + PP_0118 0.72 -0.1
124,419 + PP_0118 0.72 -0.2
124,420 - PP_0118 0.72 -1.1
124,448 + PP_0118 0.76 -0.6
124,482 - PP_0118 0.80 -0.6
124,482 - PP_0118 0.80 +1.0
124,650 + -1.8
124,651 - -0.6
124,853 - PP_0119 0.46 -3.1
124,889 + PP_0119 0.53 -2.8
124,889 + PP_0119 0.53 -0.0
125,065 + PP_0119 0.90 -2.1
125,065 + PP_0119 0.90 -3.8
125,065 + PP_0119 0.90 +0.5
125,066 - PP_0119 0.90 +0.9
125,066 - PP_0119 0.90 -2.3
125,144 + -1.3
125,145 - +0.6
125,145 - -1.4
125,145 - -1.4
125,145 - -0.1
125,145 - -2.5
125,147 + -0.3
125,147 + +0.8
125,147 + -2.8
125,147 + -3.7
125,148 - -1.5
125,153 - -1.4
125,174 + +0.1
125,256 + -0.8
125,256 + -2.4
125,347 + PP_0120 0.18 +0.7
125,398 + PP_0120 0.24 -0.2
125,452 - PP_0120 0.30 -0.1
125,452 - PP_0120 0.30 -0.5
125,452 - PP_0120 0.30 -0.3
125,572 - PP_0120 0.43 +1.2
125,572 - PP_0120 0.43 +1.0
125,727 + PP_0120 0.60 -1.9
125,727 + PP_0120 0.60 -2.0
125,728 - PP_0120 0.60 -0.4
125,728 - PP_0120 0.60 -0.9
125,807 - PP_0120 0.69 -1.0
126,031 + +0.1
126,032 - -0.5
126,088 + +0.7
126,088 + -0.3
126,088 + -0.5
126,088 + -0.3
126,089 - +0.2
126,089 - -0.3
126,089 - -0.7
126,089 - -1.7
126,089 - +0.0
126,089 - -1.4

Or see this region's nucleotide sequence