Strain Fitness in Escherichia coli BW25113 around b4327

Experiment: Phage_N4_cage_3_mice _Feces_40 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phage_N4_cage_3_mice _Feces_40 hr
4,554,733	-				-1.5
4,554,736	+				+0.3
4,554,736	+				+0.9
4,554,736	+				-2.3
4,554,847	+				+0.3
4,554,866	-				-0.5
4,554,884	+				-2.5
4,554,886	-				+0.1
4,554,892	-				-3.0
4,554,892	-				+1.5
4,554,894	+				+1.3
4,554,894	+				+1.9
4,554,894	+				-3.2
4,554,894	+				+0.3
4,554,895	+				-0.9
4,554,895	+				+0.5
4,554,902	-				-4.6
4,554,905	+				+3.0
4,554,908	-				-0.3
4,554,908	-				+0.9
4,554,917	-				-3.3
4,554,917	-				-0.6
4,554,940	-				-0.7
4,554,940	-				+2.2
4,554,950	+				+0.9
4,554,950	+				-3.5
4,554,950	+				+0.0
4,554,950	+				+1.2
4,554,950	+				+0.9
4,554,951	+				+1.2
4,554,951	+				-0.5
4,554,953	+				+0.1
4,554,953	+				+0.1
4,554,956	-				+0.7
4,554,958	-				-1.1
4,554,968	+				+0.1
4,554,970	+				-2.4
4,554,970	+				-0.1
4,554,978	-				+0.9
4,554,984	+				+1.4
4,554,999	+				+1.2
4,554,999	+				+1.2
4,555,090	+	yjiD	b4326	0.19	-2.6
4,555,110	-	yjiD	b4326	0.24	+1.4
4,555,149	+	yjiD	b4326	0.34	-1.9
4,555,157	-	yjiD	b4326	0.36	+0.6
4,555,161	-	yjiD	b4326	0.37	-2.0
4,555,161	-	yjiD	b4326	0.37	+0.5
4,555,164	+	yjiD	b4326	0.38	+0.1
4,555,166	-	yjiD	b4326	0.38	+1.2
4,555,172	+	yjiD	b4326	0.40	-1.7
4,555,180	-	yjiD	b4326	0.42	+0.9
4,555,181	-	yjiD	b4326	0.42	-0.3
4,555,196	-	yjiD	b4326	0.46	-0.7
4,555,204	-	yjiD	b4326	0.48	-0.4
4,555,207	+	yjiD	b4326	0.49	-0.0
4,555,207	+	yjiD	b4326	0.49	+0.5
4,555,234	+	yjiD	b4326	0.55	+0.1
4,555,246	+	yjiD	b4326	0.59	+1.3
4,555,246	+	yjiD	b4326	0.59	-0.1
4,555,273	+	yjiD	b4326	0.65	+0.0
4,555,280	+	yjiD	b4326	0.67	-0.5
4,555,282	+	yjiD	b4326	0.68	-2.0
4,555,290	+	yjiD	b4326	0.70	+1.2
4,555,296	+	yjiD	b4326	0.71	-0.2
4,555,296	+	yjiD	b4326	0.71	+1.1
4,555,296	-	yjiD	b4326	0.71	+0.6
4,555,296	-	yjiD	b4326	0.71	+0.2
4,555,308	+	yjiD	b4326	0.74	-1.2
4,555,308	+	yjiD	b4326	0.74	+1.1
4,555,308	+	yjiD	b4326	0.74	+0.1
4,555,308	+	yjiD	b4326	0.74	+0.2
4,555,314	+				+0.6
4,555,316	-	yjiD	b4326	0.76	-3.9
4,555,316	-	yjiD	b4326	0.76	-3.9
4,555,327	-	yjiD	b4326	0.79	+0.2
4,555,327	-	yjiD	b4326	0.79	+0.2
4,555,332	-	yjiD	b4326	0.80	+0.9
4,555,332	-	yjiD	b4326	0.80	+0.6
4,555,398	-				-0.3
4,555,407	-				+0.9
4,555,415	+				+0.7
4,555,415	+				+0.3
4,555,498	+				+2.2
4,555,498	+	yjiE	b4327	0.11	-0.5
4,555,667	+	yjiE	b4327	0.29	+0.2
4,555,731	+	yjiE	b4327	0.36	-0.0
4,555,739	-				+0.4
4,555,764	-	yjiE	b4327	0.40	+0.1
4,555,764	-	yjiE	b4327	0.40	-0.0
4,555,791	-	yjiE	b4327	0.43	+0.5
4,555,976	+	yjiE	b4327	0.63	+1.3
4,556,042	-	yjiE	b4327	0.70	+0.7
4,556,106	+	yjiE	b4327	0.77	+0.5
4,556,168	+	yjiE	b4327	0.84	+1.7
4,556,168	+	yjiE	b4327	0.84	+0.8
4,556,334	-				+0.1
4,556,382	-				+0.8
4,556,382	-				+0.0
4,556,416	-				+0.6
4,556,449	-				-1.0
4,556,449	-				-0.2
4,556,463	+				-0.0
4,556,526	+	iadA	b4328	0.13	+0.6
4,556,552	-	iadA	b4328	0.15	-0.3
4,556,556	-	iadA	b4328	0.15	-0.1
4,556,568	-	iadA	b4328	0.16	+0.6
4,556,596	+	iadA	b4328	0.19	+1.3
4,556,596	+	iadA	b4328	0.19	-0.3
4,556,602	+	iadA	b4328	0.19	+0.3
4,556,644	+	iadA	b4328	0.23	-0.1
4,556,908	+	iadA	b4328	0.45	+0.1
4,556,942	+	iadA	b4328	0.48	+0.2
4,556,953	-	iadA	b4328	0.49	-2.3
4,556,953	-	iadA	b4328	0.49	-5.1
4,556,955	+	iadA	b4328	0.49	+0.3
4,556,982	-	iadA	b4328	0.52	-0.1
4,557,054	-	iadA	b4328	0.58	-2.1
4,557,054	-	iadA	b4328	0.58	-2.1
4,557,073	+	iadA	b4328	0.59	-0.9
4,557,120	-	iadA	b4328	0.63	+1.3
4,557,138	+	iadA	b4328	0.65	-0.1
4,557,246	-	iadA	b4328	0.74	+0.2
4,557,249	+	iadA	b4328	0.74	-0.0
4,557,257	-	iadA	b4328	0.75	+0.7