Strain Fitness in Pseudomonas putida KT2440 around PP_4203

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
4,747,788	-				+0.8
4,747,788	-				+0.2
4,747,828	-				-1.4
4,747,949	-				-1.0
4,747,995	-				+0.0
4,747,995	-				+0.4
4,748,003	-				+0.7
4,748,003	-				-2.2
4,748,025	-				+0.6
4,748,025	-				-0.2
4,748,048	-				+0.0
4,748,172	+				-0.4
4,748,172	+				-0.1
4,748,172	+				-2.1
4,748,176	+				+1.2
4,748,176	+				-1.1
4,748,176	+				+0.5
4,748,178	+				+2.7
4,748,178	+				-0.1
4,748,204	+				-1.0
4,748,224	+				-0.5
4,748,224	+				-2.4
4,748,242	+				-1.4
4,748,242	+				-0.2
4,748,242	+				-0.3
4,748,270	+				+0.5
4,749,977	+				-0.8
4,749,977	+				+0.1
4,749,978	-				+1.0
4,749,978	-				-1.2
4,749,978	-				+0.1
4,749,978	-				+0.4
4,750,060	-				+1.2
4,750,222	+		PP_4204	0.43	-0.6
4,750,222	+		PP_4204	0.43	-1.9
4,750,222	+		PP_4204	0.43	-3.6
4,750,233	+		PP_4204	0.45	-2.4
4,750,234	-		PP_4204	0.46	+0.5
4,750,234	-		PP_4204	0.46	-2.6
4,750,358	-		PP_4204	0.76	-0.6
4,750,389	-		PP_4204	0.84	-2.1
4,750,389	-		PP_4204	0.84	-0.1
4,750,389	-		PP_4204	0.84	+1.7
4,750,393	-		PP_4204	0.85	-2.1
4,750,393	-		PP_4204	0.85	-2.4
4,750,393	-		PP_4204	0.85	-2.6
4,750,395	-		PP_4204	0.86	+2.4
4,750,395	-		PP_4204	0.86	-0.8
4,750,395	-		PP_4204	0.86	-2.3
4,750,395	-		PP_4204	0.86	-1.4
4,750,438	+				-1.2
4,750,456	+				-2.2
4,750,457	-				-1.4
4,750,491	+		PP_4205	0.12	+0.1
4,750,510	+		PP_4205	0.19	-0.9
4,750,511	-		PP_4205	0.19	-0.4
4,750,511	-		PP_4205	0.19	-0.6
4,750,529	+		PP_4205	0.25	+1.0
4,750,529	+		PP_4205	0.25	+1.5
4,750,530	-		PP_4205	0.25	+0.8
4,750,541	-		PP_4205	0.29	-0.2
4,750,568	+				-1.7
4,750,588	+		PP_4205	0.45	-0.6
4,750,588	+		PP_4205	0.45	-0.4
4,750,589	-		PP_4205	0.45	-2.3
4,750,785	+				-0.7
4,750,785	+				-0.9
4,750,785	+				-0.4
4,750,785	+				-1.7
4,750,786	-				+0.3
4,750,786	-				-3.1
4,750,786	-				-1.8
4,750,786	-				-0.0
4,750,786	-				-3.0