Strain Fitness in Pseudomonas putida KT2440 around PP_2768

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
3,150,937	+				+1.0
3,151,505	+		PP_2767	0.56	-0.9
3,151,897	+				-0.4
3,151,897	+				-0.5
3,151,897	+				+0.1
3,151,897	+				+0.1
3,151,898	-				+0.5
3,151,922	+				+0.4
3,151,931	-				-1.1
3,151,931	-				+0.2
3,151,974	-		PP_2768	0.15	-1.0
3,152,152	+		PP_2768	0.35	-1.0
3,152,153	-		PP_2768	0.35	-0.7
3,152,153	-		PP_2768	0.35	-2.4
3,152,153	-		PP_2768	0.35	-3.1
3,152,542	-		PP_2768	0.79	-2.0
3,152,609	-		PP_2768	0.87	-2.1
3,152,654	-				+0.2
3,152,909	+		PP_2769	0.17	+0.8
3,152,910	-		PP_2769	0.17	+0.7
3,152,910	-		PP_2769	0.17	+0.0
3,152,996	+		PP_2769	0.26	-0.7
3,153,013	+		PP_2769	0.28	-0.7
3,153,014	-		PP_2769	0.28	-0.5
3,153,015	+		PP_2769	0.28	-0.3
3,153,133	+		PP_2769	0.40	-1.5
3,153,134	-		PP_2769	0.40	-0.1
3,153,377	-		PP_2769	0.64	+0.7
3,153,412	+		PP_2769	0.68	-0.7
3,153,413	-		PP_2769	0.68	+0.3
3,153,481	-		PP_2769	0.75	+0.3
3,153,603	-		PP_2769	0.87	+1.1
3,153,603	-		PP_2769	0.87	+0.2