Strain Fitness in Pseudomonas putida KT2440 around PP_1295

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1292 and PP_1293 overlap by 4 nucleotidesPP_1293 and PP_1294 are separated by 2 nucleotidesPP_1294 and PP_1295 are separated by 193 nucleotidesPP_1295 and PP_1296 are separated by 100 nucleotides PP_1292: PP_1292 - Cyclic pyranopterin monophosphate synthase accessory protein, at 1,478,937 to 1,479,407 _1292 PP_1293: PP_1293 - molybdopterin synthase small subunit, at 1,479,404 to 1,479,652 _1293 PP_1294: PP_1294 - molybdopterin synthase large subunit, at 1,479,655 to 1,480,101 _1294 PP_1295: PP_1295 - ATP-dependent RNA helicase RhlB, at 1,480,295 to 1,481,737 _1295 PP_1296: PP_1296 - Carboxylesterase 2, at 1,481,838 to 1,482,494 _1296 Position (kb) 1480 1481 1482Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1479.306 kb on + strand, within PP_1292at 1479.306 kb on + strand, within PP_1292at 1479.306 kb on + strand, within PP_1292at 1479.306 kb on + strand, within PP_1292at 1479.306 kb on + strand, within PP_1292at 1479.306 kb on + strand, within PP_1292at 1479.306 kb on + strand, within PP_1292at 1479.307 kb on - strand, within PP_1292at 1479.307 kb on - strand, within PP_1292at 1479.307 kb on - strand, within PP_1292at 1479.330 kb on - strand, within PP_1292at 1479.335 kb on + strand, within PP_1292at 1479.335 kb on + strand, within PP_1292at 1479.336 kb on - strand, within PP_1292at 1479.336 kb on - strand, within PP_1292at 1479.336 kb on - strand, within PP_1292at 1479.336 kb on - strand, within PP_1292at 1479.336 kb on - strand, within PP_1292at 1479.426 kb on - strandat 1479.426 kb on - strandat 1479.533 kb on + strand, within PP_1293at 1479.534 kb on - strand, within PP_1293at 1479.758 kb on - strand, within PP_1294at 1480.035 kb on + strand, within PP_1294at 1480.035 kb on + strand, within PP_1294at 1480.036 kb on - strand, within PP_1294at 1480.036 kb on - strand, within PP_1294at 1480.036 kb on - strand, within PP_1294at 1480.036 kb on - strand, within PP_1294at 1480.100 kb on - strandat 1480.100 kb on - strandat 1480.125 kb on - strandat 1480.203 kb on - strandat 1480.224 kb on + strandat 1480.393 kb on - strandat 1480.424 kb on + strandat 1480.425 kb on - strandat 1480.470 kb on + strand, within PP_1295at 1480.470 kb on + strand, within PP_1295at 1480.746 kb on + strand, within PP_1295at 1480.746 kb on + strand, within PP_1295at 1480.746 kb on + strand, within PP_1295at 1480.747 kb on - strand, within PP_1295at 1480.758 kb on + strand, within PP_1295at 1480.759 kb on - strand, within PP_1295at 1480.759 kb on - strand, within PP_1295at 1480.782 kb on + strand, within PP_1295at 1480.782 kb on + strand, within PP_1295at 1480.783 kb on - strand, within PP_1295at 1480.783 kb on - strand, within PP_1295at 1480.981 kb on + strandat 1480.981 kb on + strand, within PP_1295at 1480.981 kb on + strand, within PP_1295at 1480.982 kb on - strand, within PP_1295at 1480.982 kb on - strand, within PP_1295at 1480.982 kb on - strandat 1481.125 kb on - strand, within PP_1295at 1481.163 kb on + strand, within PP_1295at 1481.163 kb on + strand, within PP_1295at 1481.163 kb on + strand, within PP_1295at 1481.164 kb on - strand, within PP_1295at 1481.164 kb on - strand, within PP_1295at 1481.250 kb on + strand, within PP_1295at 1481.250 kb on + strand, within PP_1295at 1481.250 kb on + strand, within PP_1295at 1481.250 kb on + strand, within PP_1295at 1481.251 kb on - strand, within PP_1295at 1481.251 kb on - strand, within PP_1295at 1481.367 kb on + strand, within PP_1295at 1481.367 kb on + strand, within PP_1295at 1481.367 kb on + strand, within PP_1295at 1481.401 kb on - strand, within PP_1295at 1481.401 kb on - strand, within PP_1295at 1481.715 kb on - strandat 1481.766 kb on + strandat 1481.766 kb on + strandat 1481.767 kb on - strandat 1481.780 kb on + strandat 1481.780 kb on + strandat 1481.780 kb on + strandat 1481.781 kb on - strandat 1481.781 kb on - strandat 1481.781 kb on - strandat 1481.811 kb on + strandat 1481.811 kb on + strandat 1481.812 kb on - strandat 1481.823 kb on + strandat 1481.823 kb on + strandat 1481.824 kb on - strandat 1481.824 kb on - strandat 1481.824 kb on - strandat 1481.840 kb on - strandat 1481.917 kb on + strand, within PP_1296at 1481.950 kb on + strand, within PP_1296at 1482.073 kb on + strand, within PP_1296at 1482.073 kb on + strand, within PP_1296at 1482.073 kb on + strand, within PP_1296at 1482.073 kb on + strand, within PP_1296at 1482.073 kb on + strand, within PP_1296at 1482.073 kb on + strand, within PP_1296at 1482.074 kb on - strand, within PP_1296at 1482.074 kb on - strand, within PP_1296at 1482.074 kb on - strand, within PP_1296at 1482.074 kb on - strand, within PP_1296at 1482.074 kb on - strand, within PP_1296at 1482.117 kb on + strand, within PP_1296at 1482.117 kb on + strand, within PP_1296at 1482.117 kb on + strand, within PP_1296at 1482.117 kb on + strand, within PP_1296at 1482.117 kb on + strand, within PP_1296at 1482.118 kb on - strand, within PP_1296at 1482.118 kb on - strand, within PP_1296at 1482.118 kb on - strand, within PP_1296at 1482.118 kb on - strand, within PP_1296at 1482.118 kb on - strand, within PP_1296at 1482.118 kb on - strand, within PP_1296at 1482.119 kb on + strand, within PP_1296at 1482.119 kb on + strand, within PP_1296at 1482.119 kb on + strand, within PP_1296at 1482.120 kb on - strand, within PP_1296at 1482.120 kb on - strand, within PP_1296at 1482.120 kb on - strand, within PP_1296at 1482.120 kb on - strand, within PP_1296at 1482.120 kb on - strand, within PP_1296at 1482.121 kb on + strand, within PP_1296at 1482.121 kb on + strand, within PP_1296at 1482.122 kb on - strand, within PP_1296at 1482.122 kb on - strand, within PP_1296at 1482.292 kb on + strand, within PP_1296at 1482.293 kb on - strand, within PP_1296at 1482.293 kb on - strand, within PP_1296at 1482.293 kb on - strand, within PP_1296at 1482.310 kb on + strand, within PP_1296at 1482.310 kb on + strand, within PP_1296at 1482.403 kb on - strand, within PP_1296at 1482.403 kb on - strand, within PP_1296at 1482.404 kb on - strand, within PP_1296at 1482.412 kb on + strand, within PP_1296at 1482.523 kb on + strandat 1482.596 kb on - strandat 1482.596 kb on - strandat 1482.650 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
remove
1,479,306 + PP_1292 0.78 +1.2
1,479,306 + PP_1292 0.78 -0.5
1,479,306 + PP_1292 0.78 +0.7
1,479,306 + PP_1292 0.78 +0.1
1,479,306 + PP_1292 0.78 +0.2
1,479,306 + PP_1292 0.78 +0.0
1,479,306 + PP_1292 0.78 -1.6
1,479,307 - PP_1292 0.79 +0.6
1,479,307 - PP_1292 0.79 +1.4
1,479,307 - PP_1292 0.79 -0.6
1,479,330 - PP_1292 0.83 +1.1
1,479,335 + PP_1292 0.85 -0.1
1,479,335 + PP_1292 0.85 -0.0
1,479,336 - PP_1292 0.85 +0.5
1,479,336 - PP_1292 0.85 +0.4
1,479,336 - PP_1292 0.85 -0.6
1,479,336 - PP_1292 0.85 -0.8
1,479,336 - PP_1292 0.85 +0.1
1,479,426 - -1.1
1,479,426 - -3.0
1,479,533 + PP_1293 0.52 +1.6
1,479,534 - PP_1293 0.52 +0.8
1,479,758 - PP_1294 0.23 +1.2
1,480,035 + PP_1294 0.85 -0.2
1,480,035 + PP_1294 0.85 -1.0
1,480,036 - PP_1294 0.85 -0.2
1,480,036 - PP_1294 0.85 +0.4
1,480,036 - PP_1294 0.85 -0.1
1,480,036 - PP_1294 0.85 +0.0
1,480,100 - -0.2
1,480,100 - -1.7
1,480,125 - +1.0
1,480,203 - +0.9
1,480,224 + -0.0
1,480,393 - +0.8
1,480,424 + -0.0
1,480,425 - -1.6
1,480,470 + PP_1295 0.12 +2.2
1,480,470 + PP_1295 0.12 +0.2
1,480,746 + PP_1295 0.31 -0.2
1,480,746 + PP_1295 0.31 -1.8
1,480,746 + PP_1295 0.31 -0.1
1,480,747 - PP_1295 0.31 +0.6
1,480,758 + PP_1295 0.32 -0.4
1,480,759 - PP_1295 0.32 -1.8
1,480,759 - PP_1295 0.32 +0.1
1,480,782 + PP_1295 0.34 +0.0
1,480,782 + PP_1295 0.34 -0.7
1,480,783 - PP_1295 0.34 -1.3
1,480,783 - PP_1295 0.34 -0.6
1,480,981 + -0.6
1,480,981 + PP_1295 0.48 -0.5
1,480,981 + PP_1295 0.48 +1.0
1,480,982 - PP_1295 0.48 -0.4
1,480,982 - PP_1295 0.48 +0.5
1,480,982 - -2.5
1,481,125 - PP_1295 0.58 +1.1
1,481,163 + PP_1295 0.60 +1.6
1,481,163 + PP_1295 0.60 +0.3
1,481,163 + PP_1295 0.60 -0.0
1,481,164 - PP_1295 0.60 -1.2
1,481,164 - PP_1295 0.60 +1.1
1,481,250 + PP_1295 0.66 +0.1
1,481,250 + PP_1295 0.66 -1.3
1,481,250 + PP_1295 0.66 +0.2
1,481,250 + PP_1295 0.66 -0.6
1,481,251 - PP_1295 0.66 -0.1
1,481,251 - PP_1295 0.66 +0.3
1,481,367 + PP_1295 0.74 -0.3
1,481,367 + PP_1295 0.74 -0.8
1,481,367 + PP_1295 0.74 -0.5
1,481,401 - PP_1295 0.77 -0.9
1,481,401 - PP_1295 0.77 +0.6
1,481,715 - -0.2
1,481,766 + -0.6
1,481,766 + -1.0
1,481,767 - +0.2
1,481,780 + -1.1
1,481,780 + -0.6
1,481,780 + +0.5
1,481,781 - +0.1
1,481,781 - +2.0
1,481,781 - +0.6
1,481,811 + +0.1
1,481,811 + +1.3
1,481,812 - +1.0
1,481,823 + +0.0
1,481,823 + +1.7
1,481,824 - -0.2
1,481,824 - -0.7
1,481,824 - -0.6
1,481,840 - -2.4
1,481,917 + PP_1296 0.12 -0.2
1,481,950 + PP_1296 0.17 +1.2
1,482,073 + PP_1296 0.36 +1.0
1,482,073 + PP_1296 0.36 -1.4
1,482,073 + PP_1296 0.36 -0.9
1,482,073 + PP_1296 0.36 +1.1
1,482,073 + PP_1296 0.36 +0.8
1,482,073 + PP_1296 0.36 +0.1
1,482,074 - PP_1296 0.36 -0.5
1,482,074 - PP_1296 0.36 -2.2
1,482,074 - PP_1296 0.36 +0.1
1,482,074 - PP_1296 0.36 +0.7
1,482,074 - PP_1296 0.36 -0.2
1,482,117 + PP_1296 0.42 +0.8
1,482,117 + PP_1296 0.42 -0.0
1,482,117 + PP_1296 0.42 -0.0
1,482,117 + PP_1296 0.42 +0.7
1,482,117 + PP_1296 0.42 -0.7
1,482,118 - PP_1296 0.43 +0.5
1,482,118 - PP_1296 0.43 +0.8
1,482,118 - PP_1296 0.43 -2.3
1,482,118 - PP_1296 0.43 -0.2
1,482,118 - PP_1296 0.43 +0.7
1,482,118 - PP_1296 0.43 +0.4
1,482,119 + PP_1296 0.43 -0.4
1,482,119 + PP_1296 0.43 -0.3
1,482,119 + PP_1296 0.43 -0.1
1,482,120 - PP_1296 0.43 -0.5
1,482,120 - PP_1296 0.43 -0.8
1,482,120 - PP_1296 0.43 +0.5
1,482,120 - PP_1296 0.43 -0.1
1,482,120 - PP_1296 0.43 +2.7
1,482,121 + PP_1296 0.43 -2.2
1,482,121 + PP_1296 0.43 -0.3
1,482,122 - PP_1296 0.43 +0.0
1,482,122 - PP_1296 0.43 +0.3
1,482,292 + PP_1296 0.69 -2.1
1,482,293 - PP_1296 0.69 -1.8
1,482,293 - PP_1296 0.69 +0.6
1,482,293 - PP_1296 0.69 +0.2
1,482,310 + PP_1296 0.72 +0.4
1,482,310 + PP_1296 0.72 +1.8
1,482,403 - PP_1296 0.86 +0.3
1,482,403 - PP_1296 0.86 +1.0
1,482,404 - PP_1296 0.86 +0.8
1,482,412 + PP_1296 0.87 +0.9
1,482,523 + -0.2
1,482,596 - +0.0
1,482,596 - -4.2
1,482,650 + +0.3

Or see this region's nucleotide sequence