Strain Fitness in Pseudomonas putida KT2440 around PP_0619

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0617 and PP_0618 are separated by 1 nucleotidesPP_0618 and PP_0619 are separated by 65 nucleotidesPP_0619 and PP_0620 are separated by 90 nucleotides PP_0617: PP_0617 - Branched-chain amino acid ABC transporter, permease protein, at 722,749 to 723,768 _0617 PP_0618: PP_0618 - Branched-chain amino acid ABC transporter, permease protein, at 723,770 to 724,630 _0618 PP_0619: PP_0619 - Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, at 724,696 to 725,898 _0619 PP_0620: PP_0620 - GntR family transcriptional regulator, at 725,989 to 726,753 _0620 Position (kb) 724 725 726Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 723.706 kb on + strandat 723.706 kb on + strandat 723.707 kb on - strandat 723.828 kb on + strandat 723.828 kb on + strandat 723.829 kb on - strandat 724.010 kb on + strand, within PP_0618at 724.011 kb on - strand, within PP_0618at 724.011 kb on - strand, within PP_0618at 724.210 kb on - strand, within PP_0618at 724.212 kb on + strand, within PP_0618at 724.212 kb on + strand, within PP_0618at 724.212 kb on + strand, within PP_0618at 724.213 kb on - strand, within PP_0618at 724.218 kb on + strand, within PP_0618at 724.218 kb on + strand, within PP_0618at 724.219 kb on - strand, within PP_0618at 724.219 kb on - strand, within PP_0618at 724.235 kb on + strand, within PP_0618at 724.368 kb on + strand, within PP_0618at 724.369 kb on - strand, within PP_0618at 724.369 kb on - strand, within PP_0618at 724.369 kb on - strand, within PP_0618at 724.476 kb on + strand, within PP_0618at 724.486 kb on - strand, within PP_0618at 724.486 kb on - strand, within PP_0618at 724.575 kb on + strandat 724.575 kb on + strandat 724.575 kb on + strandat 724.575 kb on + strandat 724.575 kb on + strandat 724.575 kb on + strandat 724.576 kb on - strandat 724.576 kb on - strandat 724.576 kb on - strandat 724.618 kb on - strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.667 kb on + strandat 724.668 kb on - strandat 724.668 kb on - strandat 724.668 kb on - strandat 724.811 kb on + strandat 724.812 kb on - strandat 724.812 kb on - strandat 724.812 kb on - strandat 724.814 kb on + strandat 724.814 kb on + strandat 724.815 kb on - strandat 724.815 kb on - strandat 724.982 kb on + strand, within PP_0619at 724.982 kb on + strand, within PP_0619at 724.983 kb on - strand, within PP_0619at 725.000 kb on + strand, within PP_0619at 725.000 kb on + strand, within PP_0619at 725.000 kb on + strand, within PP_0619at 725.000 kb on + strand, within PP_0619at 725.060 kb on + strand, within PP_0619at 725.075 kb on + strand, within PP_0619at 725.075 kb on + strand, within PP_0619at 725.294 kb on + strand, within PP_0619at 725.295 kb on - strand, within PP_0619at 725.295 kb on - strandat 725.368 kb on + strand, within PP_0619at 725.368 kb on + strand, within PP_0619at 725.368 kb on + strand, within PP_0619at 725.368 kb on + strand, within PP_0619at 725.368 kb on + strand, within PP_0619at 725.368 kb on + strand, within PP_0619at 725.369 kb on - strand, within PP_0619at 725.369 kb on - strand, within PP_0619at 725.372 kb on + strand, within PP_0619at 725.372 kb on + strand, within PP_0619at 725.373 kb on - strand, within PP_0619at 725.390 kb on + strand, within PP_0619at 725.391 kb on - strand, within PP_0619at 725.391 kb on - strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.453 kb on + strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.454 kb on - strand, within PP_0619at 725.750 kb on + strand, within PP_0619at 725.759 kb on + strand, within PP_0619at 725.759 kb on + strand, within PP_0619at 725.795 kb on + strandat 725.796 kb on - strandat 725.796 kb on - strandat 725.796 kb on - strandat 725.852 kb on - strandat 725.852 kb on - strandat 725.852 kb on - strandat 725.852 kb on - strandat 725.852 kb on - strandat 725.886 kb on + strandat 725.886 kb on + strandat 725.887 kb on - strandat 725.902 kb on + strandat 725.902 kb on + strandat 725.903 kb on - strandat 725.903 kb on - strandat 725.921 kb on - strandat 725.923 kb on + strandat 725.923 kb on + strandat 725.923 kb on + strandat 725.924 kb on - strandat 725.924 kb on - strandat 725.924 kb on - strandat 725.924 kb on - strandat 725.924 kb on - strandat 725.980 kb on - strandat 726.095 kb on - strand, within PP_0620at 726.185 kb on + strand, within PP_0620at 726.186 kb on - strand, within PP_0620at 726.377 kb on + strand, within PP_0620at 726.446 kb on + strand, within PP_0620at 726.446 kb on + strand, within PP_0620at 726.447 kb on - strand, within PP_0620at 726.447 kb on - strand, within PP_0620at 726.482 kb on + strand, within PP_0620at 726.482 kb on + strand, within PP_0620at 726.482 kb on + strand, within PP_0620at 726.482 kb on + strand, within PP_0620at 726.483 kb on - strand, within PP_0620at 726.839 kb on + strandat 726.840 kb on - strandat 726.840 kb on - strandat 726.840 kb on - strandat 726.867 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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723,706 + +0.5
723,706 + +1.1
723,707 - -0.4
723,828 + +1.9
723,828 + -0.3
723,829 - +1.2
724,010 + PP_0618 0.28 +0.1
724,011 - PP_0618 0.28 -1.3
724,011 - PP_0618 0.28 -0.0
724,210 - PP_0618 0.51 +0.2
724,212 + PP_0618 0.51 +0.5
724,212 + PP_0618 0.51 -3.6
724,212 + PP_0618 0.51 -0.8
724,213 - PP_0618 0.51 -0.5
724,218 + PP_0618 0.52 -0.5
724,218 + PP_0618 0.52 +0.1
724,219 - PP_0618 0.52 -0.9
724,219 - PP_0618 0.52 +0.5
724,235 + PP_0618 0.54 -0.8
724,368 + PP_0618 0.69 -1.2
724,369 - PP_0618 0.70 -0.3
724,369 - PP_0618 0.70 +0.7
724,369 - PP_0618 0.70 -0.0
724,476 + PP_0618 0.82 +0.0
724,486 - PP_0618 0.83 -1.1
724,486 - PP_0618 0.83 +0.5
724,575 + +0.4
724,575 + +0.0
724,575 + +0.6
724,575 + +0.6
724,575 + +1.2
724,575 + +0.8
724,576 - -1.4
724,576 - -0.0
724,576 - +0.0
724,618 - +0.8
724,667 + +0.5
724,667 + -0.3
724,667 + -1.6
724,667 + +0.9
724,667 + +0.3
724,667 + +0.2
724,668 - +0.7
724,668 - +0.1
724,668 - +0.2
724,811 + -0.2
724,812 - -0.5
724,812 - -1.2
724,812 - +0.6
724,814 + +0.7
724,814 + +1.0
724,815 - -0.3
724,815 - -0.6
724,982 + PP_0619 0.24 +0.7
724,982 + PP_0619 0.24 -0.4
724,983 - PP_0619 0.24 -0.7
725,000 + PP_0619 0.25 +0.2
725,000 + PP_0619 0.25 +0.2
725,000 + PP_0619 0.25 -0.1
725,000 + PP_0619 0.25 +0.2
725,060 + PP_0619 0.30 -0.8
725,075 + PP_0619 0.32 -0.8
725,075 + PP_0619 0.32 -1.0
725,294 + PP_0619 0.50 +0.2
725,295 - PP_0619 0.50 +0.1
725,295 - -1.4
725,368 + PP_0619 0.56 -1.4
725,368 + PP_0619 0.56 -2.2
725,368 + PP_0619 0.56 -1.1
725,368 + PP_0619 0.56 -1.4
725,368 + PP_0619 0.56 -0.7
725,368 + PP_0619 0.56 -0.2
725,369 - PP_0619 0.56 -1.4
725,369 - PP_0619 0.56 -0.9
725,372 + PP_0619 0.56 -1.4
725,372 + PP_0619 0.56 +0.0
725,373 - PP_0619 0.56 -0.6
725,390 + PP_0619 0.58 +0.7
725,391 - PP_0619 0.58 +0.3
725,391 - PP_0619 0.58 -1.0
725,453 + PP_0619 0.63 -1.3
725,453 + PP_0619 0.63 +0.1
725,453 + PP_0619 0.63 -0.5
725,453 + PP_0619 0.63 -1.2
725,453 + PP_0619 0.63 -0.1
725,453 + PP_0619 0.63 +0.1
725,453 + PP_0619 0.63 -0.8
725,454 - PP_0619 0.63 -1.0
725,454 - PP_0619 0.63 +1.3
725,454 - PP_0619 0.63 -0.6
725,454 - PP_0619 0.63 +0.0
725,454 - PP_0619 0.63 -1.4
725,454 - PP_0619 0.63 +0.4
725,454 - PP_0619 0.63 -0.7
725,750 + PP_0619 0.88 -0.2
725,759 + PP_0619 0.88 -0.8
725,759 + PP_0619 0.88 +0.1
725,795 + -0.2
725,796 - -0.5
725,796 - +0.3
725,796 - -0.3
725,852 - +0.3
725,852 - +0.7
725,852 - -0.4
725,852 - -1.9
725,852 - -1.2
725,886 + +0.3
725,886 + +0.0
725,887 - +0.5
725,902 + -1.5
725,902 + +1.0
725,903 - -0.9
725,903 - +1.5
725,921 - -0.6
725,923 + +0.7
725,923 + +0.7
725,923 + +0.7
725,924 - -3.0
725,924 - +0.4
725,924 - -0.8
725,924 - +0.3
725,924 - +0.4
725,980 - +1.7
726,095 - PP_0620 0.14 +0.1
726,185 + PP_0620 0.26 +0.0
726,186 - PP_0620 0.26 +0.4
726,377 + PP_0620 0.51 -0.8
726,446 + PP_0620 0.60 +0.7
726,446 + PP_0620 0.60 -0.6
726,447 - PP_0620 0.60 -0.6
726,447 - PP_0620 0.60 +0.8
726,482 + PP_0620 0.64 -0.0
726,482 + PP_0620 0.64 +0.3
726,482 + PP_0620 0.64 -1.1
726,482 + PP_0620 0.64 -0.4
726,483 - PP_0620 0.65 -0.2
726,839 + -0.1
726,840 - -2.0
726,840 - -0.2
726,840 - -0.0
726,867 + -0.6

Or see this region's nucleotide sequence