Strain Fitness in Escherichia coli BW25113 around b2841

Experiment: Phage_N4_cage_3_mice _Feces_22 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phage_N4_cage_3_mice _Feces_22 hr
2,977,792	-	lysR	b2839	0.80	+0.8
2,977,830	+	lysR	b2839	0.84	+0.3
2,977,830	-	lysR	b2839	0.84	+0.5
2,977,838	+	lysR	b2839	0.85	+0.2
2,977,838	+	lysR	b2839	0.85	-0.5
2,977,888	+				+0.5
2,977,891	-				-0.1
2,977,891	-				+0.5
2,977,964	+				+0.4
2,978,047	-	ygeA	b2840	0.12	+0.3
2,978,150	-	ygeA	b2840	0.27	+0.7
2,978,283	-	ygeA	b2840	0.46	+0.1
2,978,375	+	ygeA	b2840	0.59	+0.1
2,978,407	+	ygeA	b2840	0.64	+0.6
2,978,407	+	ygeA	b2840	0.64	-0.2
2,978,412	-	ygeA	b2840	0.65	-1.3
2,978,412	-	ygeA	b2840	0.65	+0.6
2,978,442	+	ygeA	b2840	0.69	+0.1
2,978,442	+	ygeA	b2840	0.69	-1.0
2,978,530	+	ygeA	b2840	0.82	-0.6
2,978,535	+	ygeA	b2840	0.82	+0.7
2,978,538	-	ygeA	b2840	0.83	+0.0
2,978,554	+	ygeA	b2840	0.85	+0.8
2,978,562	-	ygeA	b2840	0.86	+0.1
2,978,672	-				+0.2
2,978,705	+				-0.3
2,978,778	-				-0.2
2,978,847	-				+0.9
2,978,893	+				+0.5
2,978,900	+				-1.6
2,978,910	+				+0.6
2,978,918	-				-0.1
2,978,953	+	araE	b2841	0.12	+0.7
2,978,953	+	araE	b2841	0.12	+1.0
2,978,988	+	araE	b2841	0.14	+0.3
2,978,988	+	araE	b2841	0.14	+1.2
2,979,068	-	araE	b2841	0.20	+1.2
2,979,068	-	araE	b2841	0.20	+0.7
2,979,070	-	araE	b2841	0.20	-0.2
2,979,123	-	araE	b2841	0.24	-1.5
2,979,251	-	araE	b2841	0.33	+1.2
2,979,260	-	araE	b2841	0.33	+0.2
2,979,260	-	araE	b2841	0.33	+0.4
2,979,287	+	araE	b2841	0.35	+1.4
2,979,375	+	araE	b2841	0.42	-0.7
2,979,375	+	araE	b2841	0.42	+0.3
2,979,375	+	araE	b2841	0.42	-0.6
2,979,478	+	araE	b2841	0.49	+1.2
2,979,478	+	araE	b2841	0.49	+0.8
2,979,568	+	araE	b2841	0.55	+0.4
2,979,582	+	araE	b2841	0.56	+0.5
2,979,622	+	araE	b2841	0.59	+0.3
2,979,753	-	araE	b2841	0.68	+0.4
2,979,804	-	araE	b2841	0.72	-1.4
2,979,810	+	araE	b2841	0.72	+0.4
2,979,844	-	araE	b2841	0.75	+0.4
2,979,844	-	araE	b2841	0.75	-0.1
2,979,844	-	araE	b2841	0.75	-0.1
2,979,844	-	araE	b2841	0.75	-0.4
2,979,892	+	araE	b2841	0.78	+0.1
2,979,892	+	araE	b2841	0.78	-1.2
2,979,892	+	araE	b2841	0.78	+0.4
2,979,921	+	araE	b2841	0.80	+0.3
2,979,974	-	araE	b2841	0.84	+1.0
2,979,974	-	araE	b2841	0.84	+0.3
2,979,993	-	araE	b2841	0.85	-0.3
2,979,993	-	araE	b2841	0.85	-0.1
2,980,000	+	araE	b2841	0.86	+0.7
2,980,000	+	araE	b2841	0.86	+0.6
2,980,000	-	araE	b2841	0.86	+0.3
2,980,005	+	araE	b2841	0.86	+0.5
2,980,005	+	araE	b2841	0.86	-0.5
2,980,005	-	araE	b2841	0.86	+0.6
2,980,068	+				-0.5
2,980,074	-				-0.1
2,980,074	-				+1.0
2,980,100	+				+1.2
2,980,145	-				-0.9
2,980,145	-				+0.4
2,980,165	+				+0.3
2,980,183	+				+0.7
2,980,187	-				-0.4
2,980,189	+				+0.3
2,980,222	+				+0.6
2,980,222	+				+1.0
2,980,222	+				+0.2
2,980,253	+				-0.1
2,980,260	-				-0.4
2,980,261	-				+0.3
2,980,262	+				-0.0
2,980,272	-				+0.9
2,980,303	+				-0.0
2,980,468	-				+0.4
2,980,477	-				+0.3
2,980,489	+				-2.7
2,980,491	-				-0.6
2,980,497	-				-0.1
2,980,497	-				+1.1
2,980,497	-				+0.7
2,980,497	-				+1.1
2,980,545	+				-0.5
2,980,547	+				-1.3
2,980,550	-				+0.7
2,980,550	-				+0.2
2,980,552	+				-0.2
2,980,553	+				+0.1
2,980,553	-				+0.1
2,980,559	-				+0.5
2,980,559	-				+0.0
2,980,560	-				+1.2
2,980,561	-				+0.2
2,980,586	+				+3.0
2,980,604	-	kduD	b2842	0.11	-0.4
2,980,609	+	kduD	b2842	0.12	+0.5
2,980,609	+	kduD	b2842	0.12	-0.8
2,980,633	-	kduD	b2842	0.15	-0.6
2,980,656	-	kduD	b2842	0.18	+0.7
2,980,709	+	kduD	b2842	0.25	+0.1
2,980,740	-	kduD	b2842	0.29	-0.4
2,980,805	+	kduD	b2842	0.38	+0.7
2,980,805	+	kduD	b2842	0.38	-0.3
2,980,805	+	kduD	b2842	0.38	+0.4
2,980,805	+	kduD	b2842	0.38	+1.5
2,980,813	-	kduD	b2842	0.39	+0.0
2,980,881	+	kduD	b2842	0.48	+0.5
2,980,884	-	kduD	b2842	0.48	+0.2
2,980,884	-	kduD	b2842	0.48	+0.6
2,980,904	+	kduD	b2842	0.51	+0.0
2,980,904	+	kduD	b2842	0.51	+0.2
2,980,910	+	kduD	b2842	0.51	+0.4
2,980,974	+	kduD	b2842	0.60	+0.4
2,980,974	+	kduD	b2842	0.60	+0.5
2,981,016	+	kduD	b2842	0.65	+0.8
2,981,050	+	kduD	b2842	0.70	-0.1
2,981,058	-	kduD	b2842	0.71	-0.1
2,981,058	-	kduD	b2842	0.71	+0.4
2,981,113	+	kduD	b2842	0.78	+0.2
2,981,120	+	kduD	b2842	0.79	+0.1
2,981,133	-	kduD	b2842	0.81	+0.0
2,981,202	-	kduD	b2842	0.90	-0.1