Strain Fitness in Escherichia coli BW25113 around b0223

Experiment: Phage_N4_cage_3_mice _Feces_22 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phage_N4_cage_3_mice _Feces_22 hr
243,467	+				-0.7
243,501	-				+0.3
243,670	-	lpcA	b0222	0.22	-4.3
243,717	+	lpcA	b0222	0.30	-3.3
243,853	+	lpcA	b0222	0.54	-3.1
243,853	+	lpcA	b0222	0.54	-3.9
243,866	-	lpcA	b0222	0.56	-3.8
243,866	-	lpcA	b0222	0.56	-3.9
243,893	-	lpcA	b0222	0.60	-5.9
243,903	+	lpcA	b0222	0.62	-3.5
244,003	+	lpcA	b0222	0.79	-5.1
244,070	-				-3.8
244,078	+				-4.6
244,080	-				-3.7
244,124	-				-0.7
244,129	-				+0.0
244,159	+				+0.5
244,197	+				+0.4
244,217	-				+0.1
244,311	+				-0.6
244,311	+				-1.4
244,319	-				+0.1
244,371	-				-0.8
244,396	-				+0.8
244,396	-				-0.0
244,442	+	yafJ	b0223	0.15	-0.4
244,453	+	yafJ	b0223	0.16	+0.1
244,516	+	yafJ	b0223	0.25	-0.3
244,551	+	yafJ	b0223	0.29	-0.8
244,564	-	yafJ	b0223	0.31	+1.0
244,564	-	yafJ	b0223	0.31	-0.3
244,616	+	yafJ	b0223	0.38	-0.3
244,616	+	yafJ	b0223	0.38	-0.7
244,637	-	yafJ	b0223	0.40	+0.8
244,728	+	yafJ	b0223	0.52	-1.1
244,763	-	yafJ	b0223	0.57	-2.0
244,799	-	yafJ	b0223	0.61	+0.3
244,799	-	yafJ	b0223	0.61	+0.2
244,868	+	yafJ	b0223	0.70	-0.1
245,001	-	yafJ	b0223	0.88	+0.3
245,001	-	yafJ	b0223	0.88	-0.4
245,011	-	yafJ	b0223	0.89	-0.2
245,083	+				+0.0
245,117	-				+0.8
245,175	+	yafK	b0224	0.15	+0.6
245,187	+	yafK	b0224	0.16	+0.8
245,207	+	yafK	b0224	0.19	+1.0
245,278	-	yafK	b0224	0.29	-0.8
245,278	-	yafK	b0224	0.29	+0.8
245,285	+	yafK	b0224	0.30	-0.8
245,296	-	yafK	b0224	0.31	+1.5
245,315	-	yafK	b0224	0.34	-1.5
245,315	-	yafK	b0224	0.34	-0.0
245,355	-	yafK	b0224	0.39	-0.2
245,357	-	yafK	b0224	0.39	+0.1
245,388	-	yafK	b0224	0.44	+0.5
245,388	-	yafK	b0224	0.44	+0.4
245,407	+	yafK	b0224	0.46	-2.4
245,431	-	yafK	b0224	0.49	+0.1
245,448	-	yafK	b0224	0.52	-0.9
245,480	-	yafK	b0224	0.56	-0.1
245,524	-	yafK	b0224	0.62	-0.1
245,524	-	yafK	b0224	0.62	+0.7
245,526	+	yafK	b0224	0.62	+0.1
245,611	+	yafK	b0224	0.74	+0.3
245,611	+	yafK	b0224	0.74	-0.4
245,671	+	yafK	b0224	0.82	-0.3
245,679	-	yafK	b0224	0.83	-2.7
245,704	-	yafK	b0224	0.86	-1.1
245,704	-				-1.6
245,706	-	yafK	b0224	0.87	+0.2
245,706	-	yafK	b0224	0.87	+0.6
245,706	-	yafK	b0224	0.87	-0.5
245,735	-				+0.1
245,743	-				-0.5
245,743	-				+0.8
245,837	+				+0.0
245,928	-				+0.0
245,928	-				-0.2
245,964	+				-0.3
245,964	+				+0.0
245,971	-				+0.2
246,048	+	yafQ	b0225	0.31	-1.4
246,048	+	yafQ	b0225	0.31	+0.6
246,048	+	yafQ	b0225	0.31	+0.4
246,086	-	yafQ	b0225	0.45	+1.4
246,086	-	yafQ	b0225	0.45	-0.6
246,086	-	yafQ	b0225	0.45	-0.2
246,086	-	yafQ	b0225	0.45	-1.5