Strain Fitness in Pseudomonas putida KT2440 around PP_1265

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
1,447,136	+		PP_1264	0.57	-0.4
1,447,137	-		PP_1264	0.57	-0.3
1,447,197	+		PP_1264	0.59	-0.7
1,447,197	+		PP_1264	0.59	-0.7
1,447,197	+		PP_1264	0.59	-1.4
1,447,198	-		PP_1264	0.59	+0.4
1,447,198	-		PP_1264	0.59	-0.2
1,447,198	-		PP_1264	0.59	-0.3
1,447,389	-		PP_1264	0.68	-0.6
1,447,466	+		PP_1264	0.72	-0.5
1,447,467	-		PP_1264	0.72	-0.7
1,447,484	+		PP_1264	0.73	+0.0
1,447,484	+		PP_1264	0.73	-0.6
1,447,485	-		PP_1264	0.73	-0.8
1,447,676	+		PP_1264	0.81	-1.1
1,447,677	-		PP_1264	0.81	-0.2
1,448,001	-				-4.3
1,448,017	+				-0.9
1,448,017	+				+0.8
1,448,018	-				+0.1
1,448,018	-				-0.5
1,448,018	-				-0.8
1,448,100	+		PP_1265	0.15	-1.3
1,448,100	+		PP_1265	0.15	+0.8
1,448,100	+		PP_1265	0.15	-0.4
1,448,100	+		PP_1265	0.15	+0.5
1,448,100	+		PP_1265	0.15	-0.9
1,448,100	+		PP_1265	0.15	-1.1
1,448,100	+		PP_1265	0.15	+0.6
1,448,101	-		PP_1265	0.15	-2.9
1,448,101	-		PP_1265	0.15	-0.3
1,448,262	+				+0.3
1,448,362	+				-0.7
1,448,362	+				-0.0
1,448,362	+				-1.5
1,448,362	+				-0.2
1,448,362	+				-1.2
1,448,362	+				-0.5
1,448,363	-				-1.5
1,448,363	-				-1.3
1,448,363	-				-1.1
1,448,363	-				-0.1
1,448,450	+		PP_1266	0.20	-1.9
1,448,451	-		PP_1266	0.20	-1.1
1,448,451	-		PP_1266	0.20	+0.2
1,448,515	+		PP_1266	0.27	+0.1
1,448,516	-				+1.1
1,448,681	-		PP_1266	0.46	+0.1
1,448,730	+		PP_1266	0.52	+0.4
1,448,731	-		PP_1266	0.52	-0.0
1,448,731	-		PP_1266	0.52	-2.1
1,448,731	-		PP_1266	0.52	-2.2
1,448,758	+		PP_1266	0.55	-1.0
1,448,759	-		PP_1266	0.56	-2.0
1,448,791	+		PP_1266	0.59	+0.3
1,448,792	-		PP_1266	0.59	-0.7
1,448,792	-		PP_1266	0.59	-1.1
1,448,848	+		PP_1266	0.66	-0.0
1,448,965	+		PP_1266	0.79	-0.6
1,448,965	+		PP_1266	0.79	-1.3
1,448,965	+		PP_1266	0.79	-1.3
1,448,965	+		PP_1266	0.79	-0.7
1,448,966	-		PP_1266	0.80	-0.8
1,448,966	-		PP_1266	0.80	-0.9
1,448,966	-		PP_1266	0.80	-0.9
1,448,966	-		PP_1266	0.80	-2.2
1,448,966	-		PP_1266	0.80	-1.5
1,449,111	+				-0.2
1,449,112	-				-0.1
1,449,112	-				-0.9
1,449,120	-				-0.7
1,449,199	+				+0.4
1,449,200	-				+0.7
1,449,200	-				+0.6