Strain Fitness in Pseudomonas putida KT2440 around PP_0142

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0140 and PP_0141 are separated by 3 nucleotidesPP_0141 and PP_0142 overlap by 4 nucleotidesPP_0142 and PP_0143 are separated by 131 nucleotides PP_0140: PP_0140 - conserved protein of unknown function, at 148,086 to 149,024 _0140 PP_0141: PP_0141 - putative ABC transporter, ATP-binding protein, at 149,028 to 149,819 _0141 PP_0142: PP_0142 - putative ABC transporter, permease protein, at 149,816 to 150,949 _0142 PP_0143: PP_0143 - conserved membrane protein of unknown function, at 151,081 to 152,106 _0143 Position (kb) 149 150 151Strain fitness (log2 ratio) -2 -1 0 1 2 3at 148.849 kb on + strand, within PP_0140at 148.849 kb on + strand, within PP_0140at 148.849 kb on + strand, within PP_0140at 148.906 kb on + strand, within PP_0140at 148.906 kb on + strand, within PP_0140at 148.907 kb on - strand, within PP_0140at 148.907 kb on - strand, within PP_0140at 148.995 kb on + strandat 148.995 kb on + strandat 149.092 kb on + strandat 149.093 kb on - strandat 149.194 kb on + strand, within PP_0141at 149.194 kb on + strand, within PP_0141at 149.194 kb on + strand, within PP_0141at 149.194 kb on + strand, within PP_0141at 149.195 kb on - strand, within PP_0141at 149.195 kb on - strand, within PP_0141at 149.195 kb on - strand, within PP_0141at 149.195 kb on - strand, within PP_0141at 149.256 kb on - strand, within PP_0141at 149.256 kb on - strand, within PP_0141at 149.704 kb on - strand, within PP_0141at 149.704 kb on - strand, within PP_0141at 149.800 kb on - strandat 150.002 kb on + strand, within PP_0142at 150.084 kb on - strand, within PP_0142at 150.396 kb on - strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.461 kb on - strand, within PP_0142at 150.461 kb on - strand, within PP_0142at 150.461 kb on - strand, within PP_0142at 150.461 kb on - strand, within PP_0142at 150.593 kb on - strand, within PP_0142at 150.649 kb on - strand, within PP_0142at 150.666 kb on + strand, within PP_0142at 150.666 kb on + strand, within PP_0142at 150.666 kb on + strand, within PP_0142at 150.666 kb on + strand, within PP_0142at 150.858 kb on + strandat 150.859 kb on - strandat 150.859 kb on - strandat 150.883 kb on + strandat 150.883 kb on + strandat 150.884 kb on - strandat 150.886 kb on + strandat 150.886 kb on + strandat 150.886 kb on + strandat 150.886 kb on + strandat 150.940 kb on + strandat 150.940 kb on + strandat 150.941 kb on - strandat 150.941 kb on - strandat 150.941 kb on - strandat 150.941 kb on - strandat 150.941 kb on - strandat 150.974 kb on - strandat 150.986 kb on + strandat 150.987 kb on - strandat 151.016 kb on + strandat 151.016 kb on + strandat 151.016 kb on + strandat 151.016 kb on + strandat 151.016 kb on + strandat 151.017 kb on - strandat 151.017 kb on - strandat 151.017 kb on - strandat 151.017 kb on - strandat 151.029 kb on + strandat 151.030 kb on - strandat 151.087 kb on - strandat 151.087 kb on - strandat 151.217 kb on + strand, within PP_0143at 151.217 kb on + strand, within PP_0143at 151.218 kb on - strand, within PP_0143at 151.292 kb on + strand, within PP_0143at 151.334 kb on + strand, within PP_0143at 151.335 kb on - strand, within PP_0143at 151.335 kb on - strand, within PP_0143at 151.340 kb on + strand, within PP_0143at 151.340 kb on + strand, within PP_0143at 151.341 kb on - strand, within PP_0143at 151.341 kb on - strand, within PP_0143at 151.408 kb on + strand, within PP_0143at 151.408 kb on + strand, within PP_0143at 151.408 kb on + strand, within PP_0143at 151.408 kb on + strand, within PP_0143at 151.409 kb on - strand, within PP_0143at 151.409 kb on - strand, within PP_0143at 151.409 kb on - strand, within PP_0143at 151.416 kb on + strand, within PP_0143at 151.715 kb on + strand, within PP_0143at 151.715 kb on + strand, within PP_0143at 151.716 kb on + strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.718 kb on + strand, within PP_0143at 151.719 kb on - strand, within PP_0143

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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148,849 + PP_0140 0.81 -0.1
148,849 + PP_0140 0.81 +1.6
148,849 + PP_0140 0.81 -0.9
148,906 + PP_0140 0.87 +0.9
148,906 + PP_0140 0.87 -1.0
148,907 - PP_0140 0.87 -1.1
148,907 - PP_0140 0.87 -0.9
148,995 + -0.3
148,995 + -0.6
149,092 + -1.3
149,093 - +0.1
149,194 + PP_0141 0.21 -0.1
149,194 + PP_0141 0.21 -0.6
149,194 + PP_0141 0.21 +0.6
149,194 + PP_0141 0.21 -1.2
149,195 - PP_0141 0.21 +0.3
149,195 - PP_0141 0.21 +0.4
149,195 - PP_0141 0.21 -1.7
149,195 - PP_0141 0.21 -0.2
149,256 - PP_0141 0.29 +0.5
149,256 - PP_0141 0.29 -0.8
149,704 - PP_0141 0.85 -0.3
149,704 - PP_0141 0.85 -1.2
149,800 - +0.4
150,002 + PP_0142 0.16 -0.9
150,084 - PP_0142 0.24 -0.0
150,396 - PP_0142 0.51 -0.8
150,460 + PP_0142 0.57 -0.4
150,460 + PP_0142 0.57 +0.3
150,460 + PP_0142 0.57 +0.3
150,460 + PP_0142 0.57 +0.1
150,460 + PP_0142 0.57 +0.9
150,461 - PP_0142 0.57 -1.4
150,461 - PP_0142 0.57 +0.4
150,461 - PP_0142 0.57 -0.8
150,461 - PP_0142 0.57 -0.3
150,593 - PP_0142 0.69 -0.0
150,649 - PP_0142 0.73 +0.7
150,666 + PP_0142 0.75 +0.1
150,666 + PP_0142 0.75 -2.0
150,666 + PP_0142 0.75 -1.5
150,666 + PP_0142 0.75 +0.0
150,858 + -0.6
150,859 - -0.7
150,859 - +3.5
150,883 + -0.3
150,883 + +1.0
150,884 - -0.4
150,886 + -2.5
150,886 + +0.2
150,886 + +1.3
150,886 + -0.4
150,940 + -0.1
150,940 + +0.1
150,941 - -1.9
150,941 - +0.8
150,941 - -0.7
150,941 - -0.6
150,941 - +0.2
150,974 - +0.2
150,986 + -0.6
150,987 - -0.9
151,016 + -0.1
151,016 + +0.1
151,016 + +0.5
151,016 + -0.2
151,016 + -0.1
151,017 - -0.3
151,017 - +0.3
151,017 - +0.7
151,017 - +0.4
151,029 + +0.8
151,030 - -0.1
151,087 - +0.1
151,087 - +1.1
151,217 + PP_0143 0.13 -1.8
151,217 + PP_0143 0.13 +0.2
151,218 - PP_0143 0.13 -0.5
151,292 + PP_0143 0.21 -0.1
151,334 + PP_0143 0.25 -0.3
151,335 - PP_0143 0.25 +1.5
151,335 - PP_0143 0.25 +0.2
151,340 + PP_0143 0.25 -0.3
151,340 + PP_0143 0.25 -0.0
151,341 - PP_0143 0.25 -0.1
151,341 - PP_0143 0.25 +0.2
151,408 + PP_0143 0.32 -0.0
151,408 + PP_0143 0.32 -0.6
151,408 + PP_0143 0.32 -0.3
151,408 + PP_0143 0.32 +0.0
151,409 - PP_0143 0.32 -0.0
151,409 - PP_0143 0.32 +0.6
151,409 - PP_0143 0.32 +0.4
151,416 + PP_0143 0.33 +0.3
151,715 + PP_0143 0.62 -0.6
151,715 + PP_0143 0.62 -1.1
151,716 + PP_0143 0.62 -0.3
151,716 - PP_0143 0.62 +0.0
151,716 - PP_0143 0.62 +0.2
151,716 - PP_0143 0.62 -0.9
151,716 - PP_0143 0.62 +0.4
151,716 - PP_0143 0.62 -0.4
151,716 - PP_0143 0.62 -0.4
151,718 + PP_0143 0.62 +2.0
151,719 - PP_0143 0.62 +0.2

Or see this region's nucleotide sequence