Strain Fitness in Escherichia coli BW25113 around b1011

Experiment: PBS_cage_2_mice _Feces_40 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PBS_cage_2_mice _Feces_40 hr
1,070,569	-	rarA	b1009	0.48	-0.5
1,070,580	-	rarA	b1009	0.49	+0.2
1,070,580	-	rarA	b1009	0.49	+1.2
1,070,633	-	rarA	b1009	0.56	+1.6
1,070,633	-	rarA	b1009	0.56	-0.6
1,070,678	-	rarA	b1009	0.61	+0.0
1,070,684	+	rarA	b1009	0.62	-0.5
1,070,689	+	rarA	b1009	0.63	-0.6
1,070,840	+	rarA	b1009	0.81	-0.2
1,070,863	-	rarA	b1009	0.84	-2.8
1,070,875	-	rarA	b1009	0.86	-1.3
1,070,875	-	rarA	b1009	0.86	-1.7
1,070,956	+				+0.3
1,070,956	+				+1.3
1,070,988	+				+1.2
1,071,230	-	ycdK	b1010	0.60	+1.1
1,071,301	-	ycdK	b1010	0.79	+0.6
1,071,301	-	ycdK	b1010	0.79	-0.2
1,071,301	-	ycdK	b1010	0.79	+1.0
1,071,319	-	ycdK	b1010	0.83	+1.1
1,071,343	-	ycdK	b1010	0.90	-0.1
1,071,343	-	ycdK	b1010	0.90	+3.7
1,071,382	+				+0.8
1,071,696	+	b1011	b1011	0.44	+1.1
1,071,712	+	b1011	b1011	0.46	+1.0
1,071,737	-	b1011	b1011	0.49	+0.3
1,072,068	+				+0.5
1,072,068	+				-2.3
1,072,104	-				-0.2
1,072,104	-				-2.2
1,072,188	+				+0.3
1,072,404	-	b1012	b1012	0.28	-5.0
1,072,404	-	b1012	b1012	0.28	+2.1
1,072,477	-	b1012	b1012	0.34	+0.6
1,072,477	-	b1012	b1012	0.34	+0.2
1,072,730	-	b1012	b1012	0.56	-0.5
1,072,755	-	b1012	b1012	0.58	+0.4