Strain Fitness in Escherichia coli BW25113 around b0944

Experiment: PBS_cage_2_mice _Feces_22 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PBS_cage_2_mice _Feces_22 hr
1,002,224	-	ycbU	b0942	0.21	-0.8
1,002,323	-	ycbU	b0942	0.39	+0.0
1,002,325	+	ycbU	b0942	0.39	-1.1
1,002,325	+	ycbU	b0942	0.39	+0.7
1,002,418	+	ycbU	b0942	0.56	+3.0
1,002,421	-	ycbU	b0942	0.57	-0.5
1,002,421	-	ycbU	b0942	0.57	-2.1
1,002,522	+	ycbU	b0942	0.76	+0.4
1,002,680	-				-0.2
1,002,688	+				-0.0
1,002,688	+				+1.4
1,002,766	+	b0943	b0943	0.20	+1.1
1,002,795	-	b0943	b0943	0.26	+1.2
1,002,803	+	b0943	b0943	0.27	-0.7
1,002,907	-	b0943	b0943	0.47	-0.5
1,002,921	+	b0943	b0943	0.50	+0.2
1,002,952	-	b0943	b0943	0.56	-0.2
1,002,952	-	b0943	b0943	0.56	-1.9
1,003,071	-	b0943	b0943	0.79	+3.0
1,003,071	-	b0943	b0943	0.79	-2.8
1,003,072	-	b0943	b0943	0.79	+0.8
1,003,109	+	b0943	b0943	0.87	+0.6
1,003,112	+	b0943	b0943	0.87	-1.3
1,003,338	+	ycbF	b0944	0.24	+1.6
1,003,385	+	ycbF	b0944	0.30	+1.2
1,003,393	-	ycbF	b0944	0.31	+1.2
1,003,460	-	ycbF	b0944	0.41	+1.2
1,003,616	+	ycbF	b0944	0.63	-3.1
1,003,627	+	ycbF	b0944	0.64	-0.7
1,003,688	-	ycbF	b0944	0.73	+0.8
1,003,705	-	ycbF	b0944	0.75	+0.7
1,003,705	-	ycbF	b0944	0.75	-1.0
1,003,723	+	ycbF	b0944	0.78	+0.3
1,003,723	+	ycbF	b0944	0.78	-0.0
1,003,775	+	ycbF	b0944	0.85	+0.9
1,003,775	+	ycbF	b0944	0.85	+1.1
1,003,959	-				-0.7
1,004,039	-				-0.2
1,004,050	-				+0.2
1,004,119	+	pyrD	b0945	0.13	-0.7
1,004,126	+	pyrD	b0945	0.13	-0.9
1,004,126	+	pyrD	b0945	0.13	-0.7
1,004,126	+	pyrD	b0945	0.13	+0.0
1,004,134	+	pyrD	b0945	0.14	-2.2
1,004,141	+	pyrD	b0945	0.15	-0.3
1,004,174	-	pyrD	b0945	0.18	-1.2
1,004,234	+	pyrD	b0945	0.24	+0.5
1,004,239	+	pyrD	b0945	0.25	-0.1
1,004,256	-	pyrD	b0945	0.26	-0.7
1,004,256	-	pyrD	b0945	0.26	+0.4
1,004,277	-	pyrD	b0945	0.28	+0.9
1,004,307	-	pyrD	b0945	0.31	-1.3
1,004,350	+	pyrD	b0945	0.36	+1.4
1,004,403	-	pyrD	b0945	0.41	-0.5
1,004,440	+	pyrD	b0945	0.44	-1.2
1,004,513	+	pyrD	b0945	0.52	-1.4
1,004,513	+	pyrD	b0945	0.52	-3.7
1,004,523	+	pyrD	b0945	0.53	-0.2
1,004,531	-	pyrD	b0945	0.53	-1.4
1,004,545	-	pyrD	b0945	0.55	-4.1
1,004,553	-	pyrD	b0945	0.56	-3.4
1,004,568	+	pyrD	b0945	0.57	-0.7
1,004,568	+	pyrD	b0945	0.57	-0.9
1,004,614	+	pyrD	b0945	0.62	+0.4
1,004,636	+	pyrD	b0945	0.64	+0.5
1,004,689	-	pyrD	b0945	0.69	+0.9
1,004,698	+	pyrD	b0945	0.70	-1.1
1,004,698	+	pyrD	b0945	0.70	-1.1
1,004,708	-	pyrD	b0945	0.71	-0.7
1,004,717	+	pyrD	b0945	0.72	-0.5
1,004,720	-	pyrD	b0945	0.72	-0.2
1,004,722	+	pyrD	b0945	0.72	-0.5
1,004,727	+	pyrD	b0945	0.73	-0.3
1,004,727	+	pyrD	b0945	0.73	+0.6
1,004,733	-	pyrD	b0945	0.73	-2.2
1,004,733	-	pyrD	b0945	0.73	-2.7
1,004,736	-	pyrD	b0945	0.74	-4.9
1,004,780	-	pyrD	b0945	0.78	-0.2
1,004,783	+	pyrD	b0945	0.78	-0.6
1,004,785	+	pyrD	b0945	0.79	-1.5
1,004,791	-	pyrD	b0945	0.79	-1.8
1,004,791	-	pyrD	b0945	0.79	-3.4
1,004,801	-	pyrD	b0945	0.80	+0.8
1,004,871	+	pyrD	b0945	0.87	-0.5
1,004,871	+	pyrD	b0945	0.87	-0.8
1,004,871	+	pyrD	b0945	0.87	-1.2