Experiment: PBS_cage_1_mice _Feces_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdpD and kdpC overlap by 8 nucleotides kdpC and kdpB are separated by 8 nucleotides kdpB and kdpA are separated by 22 nucleotides
b0695: kdpD - fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein (NCBI), at 720,953 to 723,637
kdpD
b0696: kdpC - potassium-transporting ATPase subunit C (NCBI), at 723,630 to 724,202
kdpC
b0697: kdpB - potassium-transporting ATPase subunit B (NCBI), at 724,211 to 726,259
kdpB
b0698: kdpA - potassium-transporting ATPase subunit A (NCBI), at 726,282 to 727,955
kdpA
Position (kb) 724
725
726
727 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 723.323 kb on - strand, within kdpD at 723.323 kb on - strand, within kdpD at 723.351 kb on - strand, within kdpD at 723.596 kb on + strand at 723.658 kb on - strand at 723.961 kb on - strand, within kdpC at 723.961 kb on - strand, within kdpC at 724.046 kb on - strand, within kdpC at 724.060 kb on + strand, within kdpC at 724.198 kb on + strand at 724.216 kb on - strand at 724.216 kb on - strand at 724.234 kb on + strand at 724.234 kb on + strand at 724.279 kb on + strand at 724.315 kb on - strand at 724.467 kb on - strand, within kdpB at 724.467 kb on - strand, within kdpB at 724.546 kb on - strand, within kdpB at 724.674 kb on + strand, within kdpB at 724.704 kb on - strand, within kdpB at 724.800 kb on + strand, within kdpB at 724.972 kb on - strand, within kdpB at 725.134 kb on + strand, within kdpB at 725.140 kb on - strand, within kdpB at 725.206 kb on - strand, within kdpB at 725.274 kb on + strand, within kdpB at 725.280 kb on + strand, within kdpB at 725.280 kb on + strand, within kdpB at 725.492 kb on + strand, within kdpB at 725.520 kb on - strand, within kdpB at 725.553 kb on - strand, within kdpB at 725.553 kb on - strand, within kdpB at 725.667 kb on + strand, within kdpB at 725.705 kb on + strand, within kdpB at 725.778 kb on - strand, within kdpB at 725.839 kb on + strand, within kdpB at 725.871 kb on - strand, within kdpB at 725.966 kb on + strand, within kdpB at 725.974 kb on - strand, within kdpB at 726.039 kb on - strand, within kdpB at 726.117 kb on - strand at 726.247 kb on - strand at 726.247 kb on - strand at 726.263 kb on - strand at 726.331 kb on - strand at 726.331 kb on - strand at 726.353 kb on - strand at 726.388 kb on + strand at 726.435 kb on - strand at 726.561 kb on - strand, within kdpA at 726.580 kb on + strand, within kdpA at 726.590 kb on - strand, within kdpA at 726.590 kb on - strand, within kdpA at 726.752 kb on + strand, within kdpA at 726.945 kb on - strand, within kdpA at 726.981 kb on + strand, within kdpA at 727.062 kb on - strand, within kdpA at 727.075 kb on - strand, within kdpA at 727.075 kb on - strand, within kdpA at 727.107 kb on - strand, within kdpA
Per-strain Table
Position Strand Gene LocusTag Fraction PBS_cage_1_mice _Feces_40 hr remove 723,323 - kdpD b0695 0.88 -0.7 723,323 - kdpD b0695 0.88 -0.5 723,351 - kdpD b0695 0.89 +0.3 723,596 + -0.5 723,658 - +0.2 723,961 - kdpC b0696 0.58 +0.4 723,961 - kdpC b0696 0.58 +0.4 724,046 - kdpC b0696 0.73 +1.7 724,060 + kdpC b0696 0.75 -0.8 724,198 + -0.1 724,216 - -1.2 724,216 - +1.4 724,234 + +0.7 724,234 + -0.8 724,279 + -0.8 724,315 - +0.3 724,467 - kdpB b0697 0.12 -3.2 724,467 - kdpB b0697 0.12 +3.3 724,546 - kdpB b0697 0.16 +1.1 724,674 + kdpB b0697 0.23 +0.2 724,704 - kdpB b0697 0.24 -0.4 724,800 + kdpB b0697 0.29 +1.1 724,972 - kdpB b0697 0.37 +0.3 725,134 + kdpB b0697 0.45 -1.3 725,140 - kdpB b0697 0.45 +1.6 725,206 - kdpB b0697 0.49 +1.0 725,274 + kdpB b0697 0.52 +2.2 725,280 + kdpB b0697 0.52 -1.3 725,280 + kdpB b0697 0.52 +0.4 725,492 + kdpB b0697 0.63 +0.6 725,520 - kdpB b0697 0.64 +0.9 725,553 - kdpB b0697 0.65 +3.0 725,553 - kdpB b0697 0.65 -0.8 725,667 + kdpB b0697 0.71 +0.4 725,705 + kdpB b0697 0.73 +0.5 725,778 - kdpB b0697 0.76 +2.4 725,839 + kdpB b0697 0.79 +1.6 725,871 - kdpB b0697 0.81 -0.9 725,966 + kdpB b0697 0.86 +0.8 725,974 - kdpB b0697 0.86 +1.8 726,039 - kdpB b0697 0.89 +1.5 726,117 - -0.1 726,247 - +0.5 726,247 - +0.5 726,263 - -0.8 726,331 - -1.8 726,331 - -3.5 726,353 - +1.0 726,388 + +0.2 726,435 - +0.2 726,561 - kdpA b0698 0.17 +1.0 726,580 + kdpA b0698 0.18 +1.0 726,590 - kdpA b0698 0.18 -0.9 726,590 - kdpA b0698 0.18 -0.2 726,752 + kdpA b0698 0.28 -2.6 726,945 - kdpA b0698 0.40 +0.2 726,981 + kdpA b0698 0.42 +0.5 727,062 - kdpA b0698 0.47 -1.0 727,075 - kdpA b0698 0.47 -3.2 727,075 - kdpA b0698 0.47 +2.4 727,107 - kdpA b0698 0.49 +0.9
Or see this region's nucleotide sequence